DRSC/TRiP Functional Genomics Resources

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Protein Alignment otk and ntrk3b

DIOPT Version :10

Sequence 1:NP_523705.2 Gene:otk / 36283 FlyBaseID:FBgn0004839 Length:1033 Species:Drosophila melanogaster
Sequence 2:XP_002662799.4 Gene:ntrk3b / 798577 ZFINID:ZDB-GENE-010126-4 Length:818 Species:Danio rerio


Alignment Length:1014 Identity:223/1014 - (21%)
Similarity:362/1014 - (35%) Gaps:329/1014 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 DVGNYVCIATNLASGAREASPPAKLSVIYLESASVQLLGSNRNEL------LLKCHVEGASG--D 145
            ||||:.              |...|.    |||.   .|||.|::      :...|:|..:|  .
Zfish    50 DVGNFF--------------PLLALQ----ESAG---NGSNNNDIEELFRNITSIHIENWTGLQI 93

  Fly   146 LEPLEIEWYRNSEKLSTWK-NVQLDQHRLIIRQPGSEDDGLYRCTASNAAGRV--------MSKQ 201
            |..:::|.|...::|:... |::..|.|...|.|......|.|...::.:.::        :..:
Zfish    94 LRDVDMELYTGLQRLTIINCNLRQIQPRAFSRNPHLRYINLSRNPLASLSWQLFQHLQLVELRLE 158

  Fly   202 GYVYQSSVKC-LPRLPRRKNEKMMESWDKQTFLCRGKRGGAA--GLEALPAAPEDLRIVQGPIGQ 263
            |.|:....|. ..:|.|.:.|..:.:   |...|   :.||:  .|.::..|..||:.:......
Zfish   159 GVVFDCGCKIRWIQLWRLRGEAGLHT---QQLYC---KDGASKISLRSMSIAHCDLQDISVAHSN 217

  Fly   264 SIIKEGEPTALTCLYELPDELKNQRIQLRWRKDGKLLRQVELGGSAPIPG--------HSFDSGK 320
            ..:.||....|:|                            .|..:|:|.        ||.::.:
Zfish   218 LTVLEGGNVTLSC----------------------------NGSGSPVPEVDWAVKGLHSINTHQ 254

  Fly   321 DALLREDARLVLHKQNGTLSFAS----------IIASDAGQYQCQLQLEAHAPINSSPGILEVIE 375
            ..:...:.    |..|.||...|          |..:..|.....|||....|    |.||::.|
Zfish   255 STVYLPNT----HSINLTLVNVSRDDNGFVLTCISENVVGMNNVSLQLSVLFP----PVILKLDE 311

  Fly   376 QLKFVPQPTSKNLELDAVVAKVHCKAQGTPTPQVQWVRDGENTTLPDHVEVDAN-------GTLI 433
                   |..::...      :....:|.|.|.:.|...|......:::.::.:       |.|.
Zfish   312 -------PERRHHTC------IEFTVRGFPHPTLHWFYKGREILQSEYIRMEMDYYKDYLEGCLT 363

  Fly   434 FRNVNSEHRGNYTCLATNSQGQINATVAINVVVTPKFSVPPVGPIETSEQGTVVMHCQAIGDPKP 498
            |.|......||||.:||||.|.::.|      |...|..||                        
Zfish   364 FENPTHYDNGNYTLVATNSLGSVSKT------VFGHFLDPP------------------------ 398

  Fly   499 TIQWDKDLKYLSENNTDRERFRFLENGTLEIRNVQVEDEGSYGCTIGNSAGLKREDVQLVVKTTG 563
                                  |:|:..:.......||||            ||           
Zfish   399 ----------------------FMEDDGIMEYTPPPEDEG------------KR----------- 418

  Fly   564 DGFAPEESGGDGFLVTRAVLITMTVALA---YIVLVVGLMLWCRYRRQARKARLNDLSTKEAGGD 625
                ||:|.|          :::.|.||   .:.|:|..:|..:|.|:      |....|   |.
Zfish   419 ----PEDSFG----------MSIAVGLAGFGCVFLIVIFVLINKYSRR------NKFGIK---GP 460

  Fly   626 QPDVAGNGKGSEQEPCLSKQHNGHSKSRSKSSGDAQKSDDTACSQQSR---------------AS 675
            ...::|      :|...|..|:.:....:..|.||  ..|......||               .:
Zfish   461 VAVISG------EEDSASPLHHVNHGIVTPCSLDA--GPDAVVIGMSRIPVIENPQYFRHGHNCN 517

  Fly   676 KKSAHIY----EQLALPRSGLSELIQIGRGEFGDVFVGKLKATLVTSPSDKDADTEKQHSNSENG 736
            |.:.::.    ..:.|.|       ::|.|.||.||:.:                          
Zfish   518 KPTTYVQHIKRRDIVLKR-------ELGEGAFGKVFLAE-------------------------- 549

  Fly   737 SGGSGSGSTTLSTLNEKRRSKTSMDDIEEIKEEEQDQHNQSGLEQLVLVKALNKVKDE--QACQE 799
                   ...||...:|                           .||.||.|   ||.  .|.::
Zfish   550 -------CYNLSPTKDK---------------------------MLVAVKTL---KDPTLTARKD 577

  Fly   800 FRRQLDLLRAISHKGVVRLFGLCREKDPHYMVLEYTDWGDLKQFLLATAGKVNTATAGS--SSPP 862
            |:|:.:||..:.|:.:|:.:|:|.:.||..||.||...|||.:||.|..........|.  .|..
Zfish   578 FQREAELLTNLQHEHIVKFYGVCVDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPMQSNG 642

  Fly   863 PLTTSQVLAVAYQIARGMDAIYRARFTHRDLATRNCVISSEFIVKVSYPALCKDKYSREYHK-HR 926
            .|..||:|.:|.|||.||..:....|.|||||||||::.:..:||:....:.:|.||.:|:: ..
Zfish   643 ELGLSQMLHIATQIAAGMVYLSSQHFVHRDLATRNCLVGNGLLVKIGDFGMSRDIYSSDYYRVGG 707

  Fly   927 NTLLPIRWLAPECIQEDEYTTKSDIFAYGVVVWELFNQATKLPHEELTNEQVVQRSQAGSLEWSV 991
            :|:|||||:.||.|...:::|:||::::||::||:|... |.|...|:|.:|::....|.: ...
Zfish   708 HTMLPIRWMPPESIMYRKFSTESDVWSFGVIMWEIFTYG-KQPWFHLSNNEVIECITQGRV-LDR 770

  Fly   992 AEATPDSLREILLSCWVSNPKERPSFSQLGA---ALSKA 1027
            ....|..:.:::|.||...|::|.:...:..   ||.||
Zfish   771 PRLCPKEVYDLMLGCWQREPQQRLNIKDIQKVLYALGKA 809

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
otkNP_523705.2 Ig_3 31..99 CDD:464046 4/9 (44%)
Ig strand B 133..137 CDD:409353 0/9 (0%)
Ig <135..197 CDD:472250 14/64 (22%)
Ig strand C 150..154 CDD:409353 1/3 (33%)
Ig strand E 171..175 CDD:409353 1/3 (33%)
Ig strand F 185..190 CDD:409353 2/4 (50%)
Ig 265..360 CDD:472250 19/112 (17%)
Ig strand B 272..276 CDD:409571 1/3 (33%)
Ig strand C 290..294 CDD:409571 0/3 (0%)
Ig strand E 337..341 CDD:409571 2/3 (67%)
Ig strand F 351..356 CDD:409571 0/4 (0%)
Ig 395..460 CDD:409353 18/71 (25%)
Ig strand B 395..399 CDD:409353 0/3 (0%)
Ig strand C 408..412 CDD:409353 0/3 (0%)
Ig strand E 430..434 CDD:409353 2/3 (67%)
Ig strand F 444..449 CDD:409353 3/4 (75%)
Ig strand G 457..460 CDD:409353 0/2 (0%)
I-set 468..559 CDD:400151 11/90 (12%)
Ig strand B 486..490 CDD:409570 0/3 (0%)
Ig strand C 499..503 CDD:409570 0/3 (0%)
Ig strand E 525..529 CDD:409570 0/3 (0%)
Ig strand F 539..544 CDD:409570 0/4 (0%)
Ig strand G 552..555 CDD:409570 1/2 (50%)
PTK_CCK4 686..1026 CDD:133178 98/347 (28%)
ntrk3bXP_002662799.4 LRR_8 103..159 CDD:404697 8/55 (15%)
leucine-rich repeat 105..128 CDD:275378 5/22 (23%)
leucine-rich repeat 129..151 CDD:275378 2/21 (10%)
LRRCT_2 164..207 CDD:465313 10/48 (21%)
ig 213..298 CDD:395002 17/116 (15%)
Ig strand B 226..230 CDD:409405 1/3 (33%)
Ig strand C 239..249 CDD:409405 0/9 (0%)
Ig strand E 265..269 CDD:409405 1/3 (33%)
Ig strand F 279..285 CDD:409405 0/5 (0%)
Ig strand G 293..296 CDD:409405 0/2 (0%)
IgI_TrKABC_d5 303..395 CDD:409360 26/114 (23%)
Ig strand A 304..310 CDD:409360 3/5 (60%)
Ig strand A' 312..315 CDD:409360 1/2 (50%)
Ig strand B 318..326 CDD:409360 0/13 (0%)
Ig strand C 329..336 CDD:409360 2/6 (33%)
Ig strand C' 339..342 CDD:409360 0/2 (0%)
Ig strand D 347..353 CDD:409360 0/5 (0%)
Ig strand E 357..365 CDD:409360 2/7 (29%)
Ig strand F 373..381 CDD:409360 5/7 (71%)
Ig strand G 384..392 CDD:409360 3/13 (23%)
PTKc_TrkC 525..811 CDD:270676 100/357 (28%)

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