DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment otk and ntrk2a

DIOPT Version :9

Sequence 1:NP_523705.2 Gene:otk / 36283 FlyBaseID:FBgn0004839 Length:1033 Species:Drosophila melanogaster
Sequence 2:NP_001353483.1 Gene:ntrk2a / 65090 ZFINID:ZDB-GENE-010126-1 Length:791 Species:Danio rerio


Alignment Length:681 Identity:161/681 - (23%)
Similarity:266/681 - (39%) Gaps:174/681 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   399 CKAQGTPTPQVQWVRDGENTTLPDHVEVDANG-----TLIFRNVNS-EHRGNYTCLATNSQGQIN 457
            |...|.|||.:.|.....|:...:    :.:|     .|...||:| :::...||.:.|..|:..
Zfish   207 CNTSGMPTPNLTWTTCKLNSAFKE----EGSGQISRSQLKLTNVSSLDNKCRITCRSDNMVGESE 267

  Fly   458 ATVAINVVVTPKFS-----VPP---VGPIETSEQGTVVMHCQAIGDPKPTIQWDKDLKYLSENNT 514
            |:|.::::..|..|     :|.   ..|...|            |:|||.::|..|.:.:.|.  
Zfish   268 ASVEL
DILFPPVISKLTDAIPDHHWCIPFSVS------------GNPKPKLRWLLDEQPIQEG-- 318

  Fly   515 DRERFRFLE-----------NGTLEIRNVQVEDEGSYGCTIGNSAGLKREDVQLVV--------- 559
                 :|:.           :|.|::.:....:.|.|.....|..|   ||.:.|.         
Zfish   319 -----KFIHTMIHDYSEGEYHGCLQLDSPTHINNGMYTLLARNQFG---EDSKAVSAHFMHEPWN 375

  Fly   560 --------KTTGD-GFAPEESGGDGFLVTRAVLITMTVALAYIVLVVGLMLWCRYRRQARKARLN 615
                    .||.| ...|.|.....::|.....||.|   .:::::|.|    ::.|.::     
Zfish   376 VSEPLYYDATTDDTPLGPPEDKVAVYVVVGIAAITFT---GFVLMLVIL----KFGRNSK----- 428

  Fly   616 DLSTKEAGGDQPDVAGNGKGSEQEPCLSKQHNGHSKSRSKSSGDAQKSDDTACSQQSRASKKSAH 680
                  .|...|....:.......|.....:..::.|.|..:.||                    
Zfish   429 ------FGIKGPSSVISNDDDSASPLHHVSNGSNTPSSSDMNADA-------------------- 467

  Fly   681 IYEQLALPRSGLSELIQIGRGEFGDVFVGKLKATLVTSP-------SDKDADTEKQHSNSEN--- 735
                                     |.:|..|..::.:|       |...:||..||....|   
Zfish   468 -------------------------VIIGMTKIPVIENPQYFRSTSSLLKSDTFVQHIKRHNIVL 507

  Fly   736 ----GSGGSGSGSTTLSTLNEKRRSKTSMDDIEEIKEEEQDQHNQSGLEQLVLVKALNKVKDEQA 796
                |.|..|               |..:.:...:..:::        :.||.||.| |...|.|
Zfish   508 KRELGEGAFG---------------KVFLAECYNLSADQE--------KILVAVKTL-KEASENA 548

  Fly   797 CQEFRRQLDLLRAISHKGVVRLFGLCREKDPHYMVLEYTDWGDLKQFLLATAGKVNTATAGS-SS 860
            .::|.|:.:||..:.|:.:|..:|:|.|.||..||.||...|||.:||.|........:.|. ..
Zfish   549 RKDFHREAELLTNLQHEHIVTFYGVCVESDPLIMVFEYMMHGDLNKFLRAHGPDAVLMSDGQIQQ 613

  Fly   861 PPPLTTSQVLAVAYQIARGMDAIYRARFTHRDLATRNCVISSEFIVKVSYPALCKDKYSREYHK- 924
            ...||.||:|.:|.|||.||..:....|.|||||||||::....:||:....:.:|.||.:|:: 
Zfish   614 QAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRV 678

  Fly   925 HRNTLLPIRWLAPECIQEDEYTTKSDIFAYGVVVWELFNQATKLPHEELTNEQVVQRSQAGSLEW 989
            ..:|:|||||:.||.|...::||:||:::.|||:||:|... |.|..:|:|.:|::....|.: .
Zfish   679 GGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYG-KQPWYQLSNNEVIECITQGRV-L 741

  Fly   990 SVAEATPDSLREILLSCWVSNPKERPSFSQL 1020
            ......|..:.:::|.||...|..|.:..::
Zfish   742 QRPRTCPKEVYDLMLGCWQREPHTRLNIKEI 772

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
otkNP_523705.2 I-set 26..115 CDD:254352
Ig 31..115 CDD:299845
IGc2 133..195 CDD:197706
Ig 268..373 CDD:299845
Ig 395..460 CDD:143165 17/66 (26%)
I-set 468..559 CDD:254352 21/109 (19%)
IGc2 484..549 CDD:197706 13/75 (17%)
PTK_CCK4 686..1026 CDD:133178 102/351 (29%)
STYKc 692..1020 CDD:214568 102/343 (30%)
ntrk2aNP_001353483.1 LRR_8 84..143 CDD:316378
leucine-rich repeat 86..109 CDD:275378
leucine-rich repeat 110..132 CDD:275378
I-set 186..272 CDD:333254 18/68 (26%)
Ig 292..370 CDD:325142 19/99 (19%)
PKc_like 499..788 CDD:328722 94/300 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1026
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.