DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment otk and ntrk3a

DIOPT Version :9

Sequence 1:NP_523705.2 Gene:otk / 36283 FlyBaseID:FBgn0004839 Length:1033 Species:Drosophila melanogaster
Sequence 2:NP_001243593.1 Gene:ntrk3a / 568668 ZFINID:ZDB-GENE-010126-3 Length:818 Species:Danio rerio


Alignment Length:706 Identity:179/706 - (25%)
Similarity:285/706 - (40%) Gaps:183/706 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   389 ELDAVVAKVHCKAQGTPTPQVQWVRDG-------ENTTLPDHVEVDANGTLIFRNVNSEHRG-NY 445
            |.|.|:  :.|...|.|.|:|.|...|       :....|.:|. ..|.||:  ||:.:..| ..
Zfish   220 EGDRVM--ITCNGSGIPVPEVDWTVGGLHSINTHQANQYPPNVH-SINLTLV--NVSRDDNGFML 279

  Fly   446 TCLATNSQGQINATVAINVVVTPKFSVPPVGPIETSEQGTVVMHCQAIGDPKPTIQWD---KDLK 507
            ||:|.|..|..||::.::|...|..    :...|..::....|......:|.||:.|.   :::|
Zfish   280 TCIAENIVGMTNASIQLSVQFPPAI----INFEEPQKRHDTCMMFTVRANPLPTLHWSFKGEEIK 340

  Fly   508 YLSENNTDRERFRFLENGTLEIRNVQVEDEGSYGCTIGNSAGLKREDVQLVVKTTGDGF--APEE 570
            .....:.:.|.::....|.|..:|....:.|:|.....|..|       :.|||....|  .|.|
Zfish   341 ATEYVHPEMEVYQDNLEGCLLFKNPTQHNNGNYTLEARNYLG-------VAVKTVYAHFLHPPFE 398

  Fly   571 SGGDGFLVTRAVLITMT----------------VALAYIVLVVGLMLWCRYRRQAR---KARLND 616
            ...|....|...:.|||                ...|.::|||..:|..:|.|:::   |..:..
Zfish   399 DYPDYVSPTPTAIPTMTHRPEEDTFGVSIAVGLAGFACVLLVVMFVLINKYGRRSKFGMKGPVAV 463

  Fly   617 LS--------------------TKEAGGDQPDVAGNGKGSEQEPCL-SKQHNGHSKSRSKSSGDA 660
            :|                    |.:||.|...:     |..:.|.: :.|:..|..:.:|.:...
Zfish   464 ISGEEDSASPLHHVNHGIITPCTLDAGPDAVVI-----GMTRIPVIENPQYFRHGHNCNKPATYV 523

  Fly   661 QKSDDTACSQQSRASKKSAHIYEQ-LALPRSGLSELIQIGRGEFGDVFVGKLKATLVTSPSDKDA 724
            |                  ||..: :.|.|       ::|.|.||.||:.:              
Zfish   524 Q------------------HIKRRDIVLKR-------ELGEGAFGKVFLAE-------------- 549

  Fly   725 DTEKQHSNSENGSGGSGSGSTTLSTLNEKRRSKTSMDDIEEIKEEEQDQHNQSGLEQLVLVKALN 789
                               ...||...:|                           .||.||.| 
Zfish   550 -------------------CYNLSPTKDK---------------------------MLVAVKTL- 567

  Fly   790 KVKDE--QACQEFRRQLDLLRAISHKGVVRLFGLCREKDPHYMVLEYTDWGDLKQFLLATAGKVN 852
              ||.  .|.::|:|:.:||..:.|:.:|:.:|:|.:.||..||.||...|||.:||.|......
Zfish   568 --KDPTLAARKDFQREAELLTNLQHEHIVKFYGVCVDGDPLIMVFEYMKHGDLNKFLRAHGPDAM 630

  Fly   853 TATAGSSSPPPLTT------SQVLAVAYQIARGMDAIYRARFTHRDLATRNCVISSEFIVKVSYP 911
            ....|.    ||.|      ||:|.:|.|||.||..:....|.|||||||||::.:..:||:...
Zfish   631 ILVDGQ----PLQTNGELGLSQMLHIASQIASGMVYLGSQHFVHRDLATRNCLVGNGLLVKIGDF 691

  Fly   912 ALCKDKYSREYHK-HRNTLLPIRWLAPECIQEDEYTTKSDIFAYGVVVWELFNQATKLPHEELTN 975
            .:.:|.||.:|:: ..:|:|||||:.||.|...::||:||::::||::||:|... |.|..:|.|
Zfish   692 GMSRDIYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYG-KQPWFQLAN 755

  Fly   976 EQVVQ-RSQAGSLEWSVAEATPDSLREILLSCWVSNPKERPSFSQLGA---ALSKA 1027
            .:|:: .:|...||  .....|..:.:|:|.||...|::|.:...:..   ||.||
Zfish   756 NEVIECITQGRVLE--RPRLCPKEVYDIMLGCWQREPQQRLNIKDIQKILFALGKA 809

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
otkNP_523705.2 I-set 26..115 CDD:254352
Ig 31..115 CDD:299845
IGc2 133..195 CDD:197706
Ig 268..373 CDD:299845
Ig 395..460 CDD:143165 22/72 (31%)
I-set 468..559 CDD:254352 16/93 (17%)
IGc2 484..549 CDD:197706 13/67 (19%)
PTK_CCK4 686..1026 CDD:133178 103/352 (29%)
STYKc 692..1020 CDD:214568 99/337 (29%)
ntrk3aNP_001243593.1 LRR_8 101..157 CDD:290566
leucine-rich repeat 103..126 CDD:275378
leucine-rich repeat 127..150 CDD:275378
TPKR_C2 161..205 CDD:293525
I-set 207..298 CDD:254352 25/82 (30%)
Ig_TrkABC_d4 208..298 CDD:143173 25/82 (30%)
Ig 316..393 CDD:299845 17/83 (20%)
PTKc_TrkC 525..811 CDD:270676 107/362 (30%)
STYKc 531..803 CDD:214568 101/348 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1026
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.