DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment otk and Ntrk3

DIOPT Version :10

Sequence 1:NP_523705.2 Gene:otk / 36283 FlyBaseID:FBgn0004839 Length:1033 Species:Drosophila melanogaster
Sequence 2:XP_036008659.1 Gene:Ntrk3 / 18213 MGIID:97385 Length:850 Species:Mus musculus


Alignment Length:1070 Identity:244/1070 - (22%)
Similarity:369/1070 - (34%) Gaps:401/1070 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 RRTEDVGNYVCIATNLASGAREASPPAKLSVIYLESASVQLLGSNRNELLLKCHVEGASG--DLE 147
            ||.:| ||...:.....||....            :||:.:...:||  :...|:|...|  .|.
Mouse    46 RRPDD-GNLFPLLEGQDSGNSNG------------NASINITDISRN--ITSIHIENWRGLHTLN 95

  Fly   148 PLEIEWYRNSEKLSTWKNVQLDQHRLIIRQPGSEDDGLYRCTASNAAGRVMSKQGYVYQSSVKCL 212
            .:::|.|...:|| |.||..|   |.|  ||        |..|.|...|      |:..||    
Mouse    96 AVDMELYTGLQKL-TIKNSGL---RNI--QP--------RAFAKNPHLR------YINLSS---- 136

  Fly   213 PRLPRRKNEKMMESWDK-QTFLCRGKRGGAAGLEALPAAPEDLRIVQGPIGQSIIKEGEPTALTC 276
                   |.....||.. ||...|                 :||:.|                  
Mouse   137 -------NRLTTLSWQLFQTLSLR-----------------ELRLEQ------------------ 159

  Fly   277 LYELPDELKNQRIQLRW----------RKDGKLLRQVELGGSAPIPGHSFDSGKDALLREDARLV 331
                  ...|....:||          |.|.:.|..:...||                    :|.
Mouse   160 ------NFFNCSCDIRWMQLWQEQGEARLDSQSLYCISADGS--------------------QLP 198

  Fly   332 LHKQNGTLSFASIIASDAGQYQCQLQLEAHAPINSSPGILEVIEQLKFVPQPTSKNLEL------ 390
            |.:.|.:              ||.|                        |:.:..::.|      
Mouse   199 LFRMNIS--------------QCDL------------------------PEISVSHVNLTVREGD 225

  Fly   391 DAVVAKVHCKAQGTPTPQVQWVRDG------ENTTLPDHVEVDA-NGTLIFRNVNSEHRG-NYTC 447
            :||:.   |...|:|.|.|.|:..|      ..|.| :...|.| |.||:  ||.||..| ..||
Mouse   226 NAVIT---CNGSGSPLPDVDWIVTGLQSINTHQTNL-NWTNVHAINLTLV--NVTSEDNGFTLTC 284

  Fly   448 LATNSQGQINATVAINVVVTPKFSVPPVGPIETSEQGTVVMHCQAI---GDPKPTIQWDKDLKYL 509
            :|.|..|..||:||:.|...|:.       :...|....:.||...   |:|.||:.|       
Mouse   285 IAENVVGMSNASVALTVYYPPRV-------VSLVEPEVRLEHCIEFVVRGNPTPTLHW------- 335

  Fly   510 SENNTDRERFRFLENGTLEIRNVQV-------EDEGSYGCTI---------GNSAGLKREDVQLV 558
                        |.||. .:|..::       |.|.|.||.:         ||...:.:..:...
Mouse   336 ------------LYNGQ-PLRESKIIHMDYYQEGEVSEGCLLFNKPTHYNNGNYTLIAKNALGTA 387

  Fly   559 VKTTGDGF----------------------------APEESGGDGFLVTRAVLITMTVALAYIVL 595
            .:|....|                            .|||   |.|.|:.||.:   .|.|.::|
Mouse   388 NQTINGHFLKEPFPESTDFFDFESDASPTPPITVTHKPEE---DTFGVSIAVGL---AAFACVLL 446

  Fly   596 VVGLMLWCRYRRQARKARLNDLSTKEAGGDQPDVAGNGKGSEQEPCLSKQHNGHSKSRSKSSGDA 660
            ||..::..:|.|:::           .|...|....:|:.....|.   .|..|..: :.||.||
Mouse   447 VVLFIMINKYGRRSK-----------FGMKGPVAVISGEEDSASPL---HHINHGIT-TPSSLDA 496

  Fly   661 QKSDDTACSQQSR---------------ASKKSAHIY----EQLALPRSGLSELIQIGRGEFGDV 706
              ..||.....:|               ..|...::.    ..:.|.|       ::|.|.||.|
Mouse   497 --GPDTVVIGMTRIPVIENPQYFRQGHNCHKPDTYVQHIKRRDIVLKR-------ELGEGAFGKV 552

  Fly   707 FVGKLKATLVTSPSDKDADTEKQHSNSENGSGGSGSGSTTLSTLNEKRRSKTSMDDIEEIKEEEQ 771
            |:.:                                 ...||...:|                  
Mouse   553 FLAE---------------------------------CYNLSPTKDK------------------ 566

  Fly   772 DQHNQSGLEQLVLVKALNKVKDE--QACQEFRRQLDLLRAISHKGVVRLFGLCREKDPHYMVLEY 834
                     .||.||||   ||.  .|.::|:|:.:||..:.|:.:|:.:|:|.:.||..||.||
Mouse   567 ---------MLVAVKAL---KDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEY 619

  Fly   835 TDWGDLKQFLLATAGKVNTATAGS--SSPPPLTTSQVLAVAYQIARGMDAIYRARFTHRDLATRN 897
            ...|||.:||.|..........|.  .:...|..||:|.:|.|||.||..:....|.||||||||
Mouse   620 MKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRN 684

  Fly   898 CVISSEFIVKVSYPALCKDKYSREYHKH--------------------------RNTLLPIRWLA 936
            |::.:..:||:....:.:|.||.:|::.                          .:|:|||||:.
Mouse   685 CLVGANLLVKIGDFGMSRDVYSTDYYREGPCQKGPFNVSWQQQRLAASAASTVGGHTMLPIRWMP 749

  Fly   937 PECIQEDEYTTKSDIFAYGVVVWELFNQATKLPHEELTNEQVVQ-RSQAGSLEWSVAEATPDSLR 1000
            ||.|...::||:||::::||::||:|... |.|..:|:|.:|:: .:|...||  .....|..:.
Mouse   750 PESIMYRKFTTESDVWSFGVILWEIFTYG-KQPWFQLSNTEVIECITQGRVLE--RPRVCPKEVY 811

  Fly  1001 EILLSCWVSNPKERPSFSQLGA---ALSKA 1027
            :::|.||...|::|.:..::..   ||.||
Mouse   812 DVMLGCWQREPQQRLNIKEIYKILHALGKA 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
otkNP_523705.2 Ig_3 31..99 CDD:464046 5/13 (38%)
Ig strand B 133..137 CDD:409353 0/3 (0%)
Ig <135..197 CDD:472250 19/63 (30%)
Ig strand C 150..154 CDD:409353 1/3 (33%)
Ig strand E 171..175 CDD:409353 1/3 (33%)
Ig strand F 185..190 CDD:409353 1/4 (25%)
Ig 265..360 CDD:472250 14/104 (13%)
Ig strand B 272..276 CDD:409571 0/3 (0%)
Ig strand C 290..294 CDD:409571 2/13 (15%)
Ig strand E 337..341 CDD:409571 0/3 (0%)
Ig strand F 351..356 CDD:409571 2/4 (50%)
Ig 395..460 CDD:409353 26/72 (36%)
Ig strand B 395..399 CDD:409353 0/3 (0%)
Ig strand C 408..412 CDD:409353 1/3 (33%)
Ig strand E 430..434 CDD:409353 2/3 (67%)
Ig strand F 444..449 CDD:409353 2/4 (50%)
Ig strand G 457..460 CDD:409353 2/2 (100%)
I-set 468..559 CDD:400151 20/109 (18%)
Ig strand B 486..490 CDD:409570 0/3 (0%)
Ig strand C 499..503 CDD:409570 1/3 (33%)
Ig strand E 525..529 CDD:409570 1/3 (33%)
Ig strand F 539..544 CDD:409570 3/4 (75%)
Ig strand G 552..555 CDD:409570 0/2 (0%)
PTK_CCK4 686..1026 CDD:133178 101/373 (27%)
Ntrk3XP_036008659.1 LRR_8 103..160 CDD:404697 26/128 (20%)
leucine-rich repeat 105..128 CDD:275378 13/36 (36%)
leucine-rich repeat 129..151 CDD:275378 9/38 (24%)
leucine-rich repeat 152..164 CDD:275378 4/52 (8%)
LRRCT_2 163..208 CDD:465313 12/78 (15%)
ig 214..299 CDD:395002 30/90 (33%)
Ig strand B 227..231 CDD:409353 2/6 (33%)
Ig strand C 240..244 CDD:409353 1/3 (33%)
Ig strand E 266..270 CDD:409353 1/3 (33%)
Ig strand F 281..286 CDD:409353 2/4 (50%)
Ig strand G 294..297 CDD:409353 2/2 (100%)
IgI_TrKABC_d5 304..396 CDD:409360 21/118 (18%)
Ig strand A 305..311 CDD:409360 1/12 (8%)
Ig strand A' 313..316 CDD:409360 0/2 (0%)
Ig strand B 319..327 CDD:409360 2/7 (29%)
Ig strand C 330..337 CDD:409360 3/25 (12%)
Ig strand C' 340..343 CDD:409360 0/3 (0%)
Ig strand D 348..354 CDD:409360 0/5 (0%)
Ig strand E 358..366 CDD:409360 3/7 (43%)
Ig strand F 374..382 CDD:409360 2/7 (29%)
Ig strand G 385..393 CDD:409360 1/7 (14%)
PTKc_TrkC 532..843 CDD:270676 103/383 (27%)

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