DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-7 and rhbdf1a

DIOPT Version :10

Sequence 1:NP_523704.1 Gene:rho-7 / 36281 FlyBaseID:FBgn0033672 Length:351 Species:Drosophila melanogaster
Sequence 2:XP_005164392.1 Gene:rhbdf1a / 798402 ZFINID:ZDB-GENE-040704-75 Length:893 Species:Danio rerio


Alignment Length:228 Identity:42/228 - (18%)
Similarity:76/228 - (33%) Gaps:71/228 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 LCNLVAFAMWRVPALKSTMITYFTSNPAAKVVCWPMFLSTFSHYSAMHLFANMYVMHSFANAAAV 217
            :|.|:.|.                 ||......:.::||.|.|...:|...::....:.......
Zfish   676 VCGLLPFL-----------------NPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEK 723

  Fly   218 SLGKEQFLAVYLSAGVFSSLMSVL---YKAATSQAGMSLGASGAIMT-------LLAYVCTQYPD 272
            ..|..:...:|:.:|:..:|.|.:   |:|....||...|....:..       :||.....:..
Zfish   724 LAGWLRISIIYILSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVELIQSWQILAQPWRAFTK 788

  Fly   273 TQLSILFLPALTFSAGAGIKVLMGIDFAGVVMGWKFFDHAAHLGGAMFGIF-------WATYG-A 329
            ....:|||                  ||..::.|  .|:.||:.|.:.|.|       :.::| .
Zfish   789 LLCVVLFL------------------FAFGLLPW--IDNFAHISGFISGFFLSFAFLPYISFGRL 833

  Fly   330 QIWAKR----------IGL------LNYYHDLR 346
            .::.||          :||      |.|.|.::
Zfish   834 DMYRKRCQIIIFLVVFLGLFAGLVVLFYVHPIK 866

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-7NP_523704.1 Rhomboid 186..327 CDD:426384 29/157 (18%)
rhbdf1aXP_005164392.1 Rhomboid_SP 130..323 CDD:463639
Rhomboid 685..828 CDD:426384 30/162 (19%)
Blue background indicates that the domain is not in the aligned region.

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