DRSC/TRiP Functional Genomics Resources

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Protein Alignment MCPH1 and F42A6.5

DIOPT Version :9

Sequence 1:NP_001163123.1 Gene:MCPH1 / 36272 FlyBaseID:FBgn0260959 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_500323.2 Gene:F42A6.5 / 185649 WormBaseID:WBGene00018327 Length:102 Species:Caenorhabditis elegans


Alignment Length:85 Identity:26/85 - (30%)
Similarity:37/85 - (43%) Gaps:27/85 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   912 RFMEPFYVSSLCRPVQFN---NMKELLLL----GGATLT--ENRFKAK-YIIGDK--RRAEDDRV 964
            |||       :.|.:..|   :.|:|:.|    ||..|:  ||....| |||..|  :..|:.:.
 Worm    19 RFM-------ILRKLTMNPYFDYKQLIELVQQCGGEILSCYENLSPEKLYIIFSKHSKAIEESKN 76

  Fly   965 YLDPY--------WVLDSIT 976
            ..:.|        ||||||:
 Worm    77 IENLYKCDVVTMEWVLDSIS 96

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MCPH1NP_001163123.1 PTCB-BRCT 187..251 CDD:289507
BRCT 812..873 CDD:237994
F42A6.5NP_500323.2 BRCT 13..95 CDD:214602 24/82 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4362
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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