DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MCPH1 and W04A8.1

DIOPT Version :9

Sequence 1:NP_001163123.1 Gene:MCPH1 / 36272 FlyBaseID:FBgn0260959 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_493420.1 Gene:W04A8.1 / 173252 WormBaseID:WBGene00012236 Length:667 Species:Caenorhabditis elegans


Alignment Length:862 Identity:161/862 - (18%)
Similarity:281/862 - (32%) Gaps:300/862 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 DVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTGNDNRSEGVKSIIAKMGAQVKDRLTRT 222
            :||.:.:.::..::  .:|.|.....|...|:.:........|....|.:| :|||:::..:...
 Worm    80 EVPDSREDVLACDD--DEEVPESVGYLAGTVIVLSAGCCLPIRHHLSKKLI-EMGAEIQKTIDNR 141

  Fly   223 TTHVV---FKDGLLSTYKKATEWNIP-VVSILWIEACKVQLKICDPKQFPISNIRMYEYPELFGK 283
            |||:|   :.|..|.....:.:...| :|.:.||:.|....:.|....|.:..:|.         
 Worm   142 TTHIVVDRYADEKLVGEAMSRKPEPPMMVDVKWIQECLDNRQKCKENDFSMIGLRY--------- 197

  Fly   284 MPRVKFMQPDSELNQRPRK----RQGTPTSSKDNEPGSTNKRAQTGTPTTTTPKNDISRFFRAIN 344
                        |.|..|:    |:.||...::                        ..|:..:.
 Worm   198 ------------LKQSCRRLSSFREPTPLGDEE------------------------ETFWEDME 226

  Fly   345 HNKPSDDEAIESPATKLLNRISS--GCYTPLPAGGTPQLMGTNGSGDAVAQKVQAQKSLQFGEQT 407
            ::.|:|...:.....||..|:.:  .|...:|.                         ::|    
 Worm   227 NDAPTDPAKLLEQIRKLSERLDALMDCKPHVPV-------------------------IRF---- 262

  Fly   408 DSNTPQAKPSSTSRPRRSTVDPPPVMTPPVRTTRRRSCVAEISSPAATDTRMTRRRSSLLTSTVI 472
            :.::|..       |.|....||   .||.:...:|...:.|.||.|.....|    |:.||:.:
 Worm   263 EYHSPDC-------PTRQQPQPP---APPAKKASQRPKNSRIPSPEALQQLFT----SISTSSTL 313

  Fly   473 HEADPTQTAVAEPRMTRRRSSLLGIAKQAEETAQRQTIQPITEELAPVEENRNSIIMAETNIINN 537
                            |||.|..|...:..|        |....|...|.|         |.:.|
 Worm   314 ----------------RRRRSFTGFVLEHRE--------PGNAALEVQEAN---------NDVRN 345

  Fly   538 TNCLEQSIEITAVEAEASFKA------DRRGTLYASELMDISSPRRRSVAKSSLELRQENLAPRA 596
            |    .:.|:.|.:...:.||      |.|.|: |::|..|    |..:||:| :|.:.....::
 Worm   346 T----WNPELGAKKPRKTRKAPQKTVNDMRKTM-AADLTTI----RDVLAKNS-DLNRARTPKKS 400

  Fly   597 RQSLSNVTTQTSFLDVEQQVTPLFSSTRLPTGQTTGNRRRTIFNMDMDVINESIERMNQSHRMSL 661
            ::...|..::...:.|...                          |.|:         ||...||
 Worm   401 KKPAKNSNSRQKMMPVHVD--------------------------DSDI---------QSALASL 430

  Fly   662 ALANKAELGESCQVHEQEPPQAEPVPSQEPKRRRLFNPNDEVVIS--PAMSNRKSRLSITGSGSS 724
            .:   :|....|.|....|.::. |.:|..||.   ..:|:..||  .|...||:          
 Worm   431 TI---SEAPRECSVQILVPTRSN-VINQLQKRH---EEDDDDFISDVSAFLQRKT---------- 478

  Fly   725 SSVQKRRRSLATPAKSSSSELCAT-TPLSKAV-TNKEAEKSKSNTEISEASLDAVPEVKKSTSNA 787
               .|:.|:|   .::|.:|:..| :|:.|.: |.....|...:|||.|                
 Worm   479 ---MKKSRNL---GENSKNEVIFTGSPIEKKLKTIVRRFKMTISTEIDE---------------- 521

  Fly   788 GEENEKPKGKSRTRIRTLVHTNMHQEQINVIRKALRKLRGMRLDPTVTQHTTHLVSLEPRRTLNL 852
                                                            :.|..:||...:|||.:
 Worm   522 ------------------------------------------------ERTLCVVSRHGKRTLLV 538

  Fly   853 LRGLMRGVWIVSYQWVLASIRAGKWINEEPYELTRFSRAIEICRTERQAFGVHYQCELF-RFMEP 916
            ||.:...|.||..||:..|....:.:....|....:.| ||             ..::| .|...
 Worm   539 LRAICCDVPIVRPQWLEESFEDSQLLPSSDYIYQEWLR-IE-------------NLKIFANFHLR 589

  Fly   917 FYVSSLCRPVQFNNMKELLLLGGATLTENRFKAKYIIGDKR---RAEDDRVY--LDPYWVLDSIT 976
            .:::..|.| ...::..::...|..:|.:..:|..:|..:.   .||:|..:  ..|.:|:|||:
 Worm   590 MWIAPECTP-DSADLAWMIEKCGGKVTRHLHRADLVIAPENWEIPAENDVEFELATPLFVIDSIS 653

  Fly   977 NMQIQRFGKYLMKSAII 993
            ..::|.|.:|   |.||
 Worm   654 MAELQNFREY---SVII 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MCPH1NP_001163123.1 PTCB-BRCT 187..251 CDD:289507 15/67 (22%)
BRCT 812..873 CDD:237994 14/60 (23%)
W04A8.1NP_493420.1 BRCT 106..180 CDD:237994 18/74 (24%)
BRCT 493..558 CDD:214602 22/128 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006938
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4865
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.940

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