DRSC/TRiP Functional Genomics Resources

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Protein Alignment cuff and Rai1

DIOPT Version :9

Sequence 1:NP_610709.1 Gene:cuff / 36269 FlyBaseID:FBgn0260932 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_996492.1 Gene:Rai1 / 2768882 FlyBaseID:FBgn0030793 Length:375 Species:Drosophila melanogaster


Alignment Length:401 Identity:92/401 - (22%)
Similarity:164/401 - (40%) Gaps:81/401 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 HSWAEKDNLVFPTITKPVSNGWFAWSPIGQFEPNSQKVPYVVVPPSIKFPISLR--YKDSPPKLE 75
            |......|..||:|::|...|..:.:...:|..::....|:...|....|..|.  .:|...|..
  Fly    15 HKLGAMYNTPFPSISRPKCIGVCSINASREFVDDASCASYLAGQPWPPLPFDLNGGIEDVIRKPV 79

  Fly    76 KKPNIFLDNMLQYI---------ESSSYMYVMVRNNQQAQLNANIVCTSEVLELMMCAPYEKKTG 131
            :.....|:.||.||         :|||       :.:..:|:::.|....:|..:||..|:.:: 
  Fly    80 ENGKRDLEIMLTYIKQHQKELLRQSSS-------DARNLRLDSDFVTLRGILRQIMCLQYDNRS- 136

  Fly   132 WSLGVTRYRNTMYICRIDVEQPD-PIDQDNLKRAMQEFWLRNLRTHCVFENGIKMHQHNQSSE-- 193
            :.:..|.....:|:|:  .|.|: .::..|:.||.        |..|.:  |.|..|:..|::  
  Fly   137 FRVKATLLNGNVYMCK--EETPEQQLENANMSRAQ--------RVMCSW--GFKFEQYLTSAQAQ 189

  Fly   194 ----------EHLRFHGVFSFDLNGNRVLF-------DSPVLAEMPSTTLNGSALSWVDLQIRPM 241
                      |...|.||:..:|.|..:|:       ||....:.....:..| |.:|:|:....
  Fly   190 GKPVTNVPVNEAEEFMGVYRTNLAGILMLYGAELDCVDSKEPVDFKDCRVLDS-LKFVELKTSVF 253

  Fly   242 FMSRLDWPEHNRT----EALKWWVKCFLLGIESLYIARRDENAHVHNIEK----TLVRDLWKSCE 298
            .|:    |...||    ::..||.:.||:||.:||:..||....:..|::    ||.|:      
  Fly   254 NMN----PHQIRTFKSFKSANWWSQSFLVGITTLYVGLRDTKGMLQRIDEIDVATLARN------ 308

  Fly   299 KDWSPTVCANFMIYLLNCISQVMAPIDCPSTVYLFQFDASQGTVSYKGLRGRNQYTFVSDWFRMM 363
            |.||.:..|.::...|..:.:::..|:.|..|....|  .....||:.||| .::..:.:|:|  
  Fly   309 KPWSASAMAWYLEQFLRNLKKLLVNINDPFAVVQVTF--LNKHASYEVLRG-PEHQILPNWYR-- 368

  Fly   364 LDDHTNDMCKT 374
                  |:.||
  Fly   369 ------DLLKT 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cuffNP_610709.1 RAI1 <257..284 CDD:285815 10/26 (38%)
Rai1NP_996492.1 RAI1 224..296 CDD:285815 20/76 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454798
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1982
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1034620at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12395
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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