DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13185 and NUC-L1

DIOPT Version :9

Sequence 1:NP_001097279.2 Gene:CG13185 / 36268 FlyBaseID:FBgn0033661 Length:5526 Species:Drosophila melanogaster
Sequence 2:NP_175322.1 Gene:NUC-L1 / 841314 AraportID:AT1G48920 Length:557 Species:Arabidopsis thaliana


Alignment Length:577 Identity:122/577 - (21%)
Similarity:216/577 - (37%) Gaps:141/577 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  4621 GENDASDKIESEDQLDDAKRPEDRKDEGDKQEPDCKEEKGIEMSDDFDAKMQDVEKPEEDDSGES 4685
            |::.::.|:.:|.:   |.:|..:    .|:||:          ||.|.|: .::|.::|.....
plant     2 GKSKSATKVVAEIK---ATKPLKK----GKREPE----------DDIDTKV-SLKKQKKDVIAAV 48

  Fly  4686 EEEEDLNKEMGETEEGAEKLDDQIWGDDEEEKPEEEQEPDMNEEDQGKGSKDEKDAHNDLDTKND 4750
            ::|:.:.|...:.|.          .||.:.:.|||::.......:...|.||        :.:|
plant    49 QKEKAVKKVPKKVES----------SDDSDSESEEEEKAKKVPAKKAASSSDE--------SSDD 95

  Fly  4751 AAKEDGKDEHEKDGLDATNEPSGEDKRKEQAKDIDDMKDPE--MDEEQTNAMHNELEEPPEPEEM 4813
            ::.:|  :...|..:.|||....:..:.:.:...||..|.|  :.::...|..|           
plant    96 SSSDD--EPAPKKAVAATNGTVAKKSKDDSSSSDDDSSDEEVAVTKKPAAAAKN----------- 147

  Fly  4814 DLGDMNNVDEGHDDQDEQPTDENPFDIDAMKENMQPAEEPEADGDDEHDANEEGDPQSDGSDSEE 4878
              |.:....|...:.|....|| |....|.| ..:||.:..:..||:.|           .|||:
plant   148 --GSVKAKKESSSEDDSSSEDE-PAKKPAAK-IAKPAAKDSSSSDDDSD-----------EDSED 197

  Fly  4879 DEAGT-EAKPAEEDHGEGEEATPEDEKDEAETQKRGELEDEDDSKPEDSPEDSKEEKEEKREEKP 4942
            ::..| :|.||........:::.||..:|:|.:|..:.:.:..:..:.|.::|.|.:|::.|   
plant   198 EKPATKKAAPAAAKAASSSDSSDEDSDEESEDEKPAQKKADTKASKKSSSDESSESEEDESE--- 259

  Fly  4943 EEHSQSKDKASKEENVQSMPETDQSSSADQVQQPQDP--------------------DIKQDQKL 4987
            :|....|.|:|..|.|.:     :.|||.|.:.|..|                    |::...| 
plant   260 DEEETPKKKSSDVEMVDA-----EKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFK- 318

  Fly  4988 DEQETGEEKDGVGQAENDADDGGHQGVAETQETVSQEDRK-----------NERQTQEKRKQGRT 5041
               |.||..|  .:...:.|||..:|....:...|:|.:|           .|.:....:::|..
plant   319 ---EAGEVVD--VRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIAQERGER 378

  Fly  5042 NEE----------RSLGEAEQNKLKQLKTIDQLKDSKESDDAEQEKPEPMDQTEAEEYQHVKEPK 5096
            .|.          ||.|:....|...:|..|.   |...||        :..|..|.:....|.|
plant   379 GERPAFTPQSGNFRSGGDGGDEKKIFVKGFDA---SLSEDD--------IKNTLREHFSSCGEIK 432

  Fly  5097 NSDKTTLDNATEEQSKKIQHQEDEPPNEEEIEAENVDE----LMEAEEPAVDPEDDA 5149
            |. ...:|..| ..||.|.:.|.....|:.:|....|.    .:..:||.  |..|:
plant   433 NV-SVPIDRDT-GNSKGIAYLEFSEGKEKALELNGSDMGGGFYLVVDEPR--PRGDS 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13185NP_001097279.2 MDN1 298..5521 CDD:227596 122/577 (21%)
P-loop_NTPase 315..505 CDD:304359
P-loop_NTPase <887..972 CDD:304359
P-loop_NTPase 1147..1283 CDD:304359
P-loop_NTPase 1454..1603 CDD:304359
P-loop_NTPase 1795..1946 CDD:304359
P-loop_NTPase <2335..>2378 CDD:304359
Prothymosin 4843..4920 CDD:281265 18/77 (23%)
PHA03151 4856..5060 CDD:177546 52/245 (21%)
MttA_Hcf106 <5046..5166 CDD:294511 26/108 (24%)
vWA_midasin 5261..5526 CDD:238737
NUC-L1NP_175322.1 RRM1_NUCLs 298..375 CDD:240896 14/82 (17%)
RRM2_NUCLs 402..479 CDD:240897 19/89 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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