DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13185 and NUC-L2

DIOPT Version :9

Sequence 1:NP_001097279.2 Gene:CG13185 / 36268 FlyBaseID:FBgn0033661 Length:5526 Species:Drosophila melanogaster
Sequence 2:NP_188491.1 Gene:NUC-L2 / 821392 AraportID:AT3G18610 Length:636 Species:Arabidopsis thaliana


Alignment Length:621 Identity:134/621 - (21%)
Similarity:226/621 - (36%) Gaps:187/621 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  4621 GENDASDKIESEDQLDDAKRPED--RKDEGDKQEPDCKEEKGIEMSD--------DFDAKMQDVE 4675
            |:.||.:.::.:......|...|  :|::.:|..|...|....:.||        :..:|::|..
plant    25 GKRDAEEDLDMQVTKKQKKELIDVVQKEKAEKTVPKKVESSSSDASDSDEEEKTKETPSKLKDES 89

  Fly  4676 KPEEDDSGESEEE--------EDLNKEMGETEEGAEKLDDQIWGDDEEEKPEEEQEPDMNEEDQG 4732
            ..||:|...|:||        |.:.|...|:....   ||..  .|||..|.::| |.:.|:.:.
plant    90 SSEEEDDSSSDEEIAPAKKRPEPIKKAKVESSSSD---DDST--SDEETAPVKKQ-PAVLEKAKV 148

  Fly  4733 KGSKDEKDAHNDLDTKNDAAKEDGKDEHEKDGLDATNEPSGEDKRKEQAKDIDDMKDPEMDEE-- 4795
            :.|..:.|:.:|.:|                 :....:|:..:|.|.::...||  |...|||  
plant   149 ESSSSDDDSSSDEET-----------------VPVKKQPAVLEKAKIESSSSDD--DSSSDEETV 194

  Fly  4796 ----QTNAMHNELEEPPEPEEMDLGDMNNVDEGHDDQDEQPTDENPFDIDAMKENMQPA-EEP-- 4853
                ||..:           |....:.::.|:| ...||:||               || :||  
plant   195 PMKKQTAVL-----------EKAKAESSSSDDG-SSSDEEPT---------------PAKKEPIV 232

  Fly  4854 -EADGDDEHDANEE------------GDPQSDGSDSEEDEAGTE-------------AKPAEEDH 4892
             :.|..||..::||            .|.:::.|.|||:.:..:             ||||.:|.
plant   233 VKKDSSDESSSDEETPVVKKKPTTVVKDAKAESSSSEEESSSDDEPTPAKKPTVVKNAKPAAKDS 297

  Fly  4893 GEGEEATPEDEKDEAETQKRGELEDEDDSKPEDSPEDSKEE--KEEKREEK--PEEHSQSKDKAS 4953
            ...||.:.|:|.|:.:...:........||.|.|.::|.:|  |||.::||  |::         
plant   298 SSSEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESDKEESKDEKVTPKK--------- 353

  Fly  4954 KEENVQSMPETDQSSSADQVQQPQD--------------------PDIKQDQKLDEQETGEEKDG 4998
            |:.:|: |.:.:|.|:|.|.:.|.:                    .||:...|    |.||..| 
plant   354 KDSDVE-MVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFK----EAGEVVD- 412

  Fly  4999 VGQAENDADDGGHQGVAETQETVSQEDRK-------------------NERQTQEKRKQGRTNE- 5043
              ...:..|||..:|....:....:|.:|                   |||.|......||..| 
plant   413 --VRLSSFDDGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANERGTPRNSNPGRKGEG 475

  Fly  5044 -----------ERSLGEAEQNKLKQLKTIDQLKD--SKESDDAEQEKPEPMDQTEAEEYQHVKEP 5095
                       ..||||.|..|        :|:.  ||..:......|...:...:..:.::...
plant   476 SQSRTIYVRGFSSSLGEDEIKK--------ELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLT 532

  Fly  5096 KNSDKTTLDNATEEQSKKIQHQEDEPPNEEEIEAEN 5131
            ...|:....:.:|.....|..:|..|.:.:|..:.|
plant   533 SGFDEALQLSGSEIGGGNIHVEESRPRDSDEGRSSN 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13185NP_001097279.2 MDN1 298..5521 CDD:227596 134/621 (22%)
P-loop_NTPase 315..505 CDD:304359
P-loop_NTPase <887..972 CDD:304359
P-loop_NTPase 1147..1283 CDD:304359
P-loop_NTPase 1454..1603 CDD:304359
P-loop_NTPase 1795..1946 CDD:304359
P-loop_NTPase <2335..>2378 CDD:304359
Prothymosin 4843..4920 CDD:281265 24/105 (23%)
PHA03151 4856..5060 CDD:177546 66/283 (23%)
MttA_Hcf106 <5046..5166 CDD:294511 17/88 (19%)
vWA_midasin 5261..5526 CDD:238737
NUC-L2NP_188491.1 RRM1_NUCLs 385..461 CDD:409884 14/82 (17%)
RRM2_NUCLs 480..556 CDD:409885 13/83 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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