DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13185 and gabrr2a

DIOPT Version :9

Sequence 1:NP_001097279.2 Gene:CG13185 / 36268 FlyBaseID:FBgn0033661 Length:5526 Species:Drosophila melanogaster
Sequence 2:XP_017207163.1 Gene:gabrr2a / 751659 ZFINID:ZDB-GENE-060825-164 Length:475 Species:Danio rerio


Alignment Length:508 Identity:93/508 - (18%)
Similarity:181/508 - (35%) Gaps:143/508 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  3952 QLYFSQFAGEIADSAKLRRSPIEKKLKEFVKIQSYSKDLSYFSMRNSVASVHRNLNKFLKEYRLS 4016
            |.:.:..|.:..|..|.||    .|.::.:|:..:.     |:||.:.......:.   .:.::.
Zfish    39 QKHGTSLAKKPPDVTKSRR----LKTEQLLKVDDHD-----FTMRPAFGGPAIPVG---VDVQVE 91

  Fly  4017 IQEKISEVFQPKDSTAKDYTFGTDKGKGLRNYNKIKYLHTERQQFVASE--------KLLEKFAI 4073
            ..:.||||  ..|.|...|         ||:|.|     .||..|.:|.        :|::|..:
Zfish    92 SLDSISEV--DMDFTMTLY---------LRHYWK-----DERLSFTSSTNKSMTFDGRLVKKIWV 140

  Fly  4074 QEEFLSDNTLLQRLDKHFRTARHVVKETLGQVPYGELITELDDLLASQLERCEHLRSLNVDRSKE 4138
            .:.|...:   :|...|..|..:::   |...|.|.::..|         |.....:.|:|.|: 
Zfish   141 PDVFFVHS---KRSFIHDTTTENIM---LRVFPDGHVLYSL---------RVTVTAACNMDFSR- 189

  Fly  4139 RPQQKQEAKQILQQKRKALTDLFKMLHRLGANYKTGLLELSLRNEFEDFQLPPYSIRSMLPRLHP 4203
            .|...|...  |:.:..|.||...||:     :|.|...||:..:....|.       ::.:.|.
Zfish   190 FPLDSQTCS--LELESYAYTDEDLMLY-----WKNGDESLSIDEKISLSQF-------LIQKFHT 240

  Fly  4204 TAQ-----------------QLDEHLDLYYMKSVFKLKLLQNIMLTPLSELGPPNIERIKGFAVD 4251
            |::                 .|..|:..:.:::.|...|:  :||:.:|            |.:|
Zfish   241 TSRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLM--VMLSWVS------------FWID 291

  Fly  4252 LFLLVQQQREHLSGSTKELHELRNSL--DSLRKLAEIIPQADINPSTLNFVKSADIAMEIK---Q 4311
                            :.....|.||  .::..::.||...:.:...::::|:.||.:.:.   .
Zfish   292 ----------------RRAVPARVSLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFV 340

  Fly  4312 HLRQIHYVLKQWKLLLSCAPSSFIEESENRLLVRKISLAQSELHSLCIQILNSSQELLNELNNAN 4376
            .|..:.|....:        .:.::|...|.| |..::.:..|...|......:..|....:.|:
Zfish   341 FLSVLEYAAVNY--------LTTVQERRERKL-RDRAVREQSLPCTCGMSHTRTMMLDGTYSEAD 396

  Fly  4377 LEYLS--SEKCVTYQKSYAEIQENI--------------KKTLELLRTGQNDY 4413
            ...|:  :|..:.:::...|.||::              ||.:..||..||.:
Zfish   397 TNSLAGYTEAPMVHEEVVPEKQEHMVVHLSVSSESTNTKKKGIRALRIMQNTH 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13185NP_001097279.2 MDN1 298..5521 CDD:227596 93/508 (18%)
P-loop_NTPase 315..505 CDD:304359
P-loop_NTPase <887..972 CDD:304359
P-loop_NTPase 1147..1283 CDD:304359
P-loop_NTPase 1454..1603 CDD:304359
P-loop_NTPase 1795..1946 CDD:304359
P-loop_NTPase <2335..>2378 CDD:304359
Prothymosin 4843..4920 CDD:281265
PHA03151 4856..5060 CDD:177546
MttA_Hcf106 <5046..5166 CDD:294511
vWA_midasin 5261..5526 CDD:238737
gabrr2aXP_017207163.1 LIC 43..474 CDD:273305 92/504 (18%)
Neur_chan_LBD 60..266 CDD:280998 49/259 (19%)
Neur_chan_memb 273..471 CDD:280999 36/216 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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