DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13185 and Gap43

DIOPT Version :9

Sequence 1:NP_001097279.2 Gene:CG13185 / 36268 FlyBaseID:FBgn0033661 Length:5526 Species:Drosophila melanogaster
Sequence 2:NP_058891.1 Gene:Gap43 / 29423 RGDID:62071 Length:226 Species:Rattus norvegicus


Alignment Length:281 Identity:67/281 - (23%)
Similarity:98/281 - (34%) Gaps:95/281 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  4897 EATPEDEKDEAETQKRGELEDEDDSKPEDSPEDS--------------KEEKEEKREEKPEEHSQ 4947
            |...||:|.|           :|..||||....:              |:.|:||:.:.|...::
  Rat    12 EKNDEDQKIE-----------QDGVKPEDKAHKAATKIQASFRGHITRKKLKDEKKGDAPAAEAE 65

  Fly  4948 SKDKASKEENVQSMPETDQSSSADQVQQPQDPDIKQDQKLDEQETGEEKDGVGQAENDADDGGHQ 5012
            :|:|             |.:..||.|                    |:|:|.|.|..||      
  Rat    66 AKEK-------------DDAPVADGV--------------------EKKEGDGSATTDA------ 91

  Fly  5013 GVAETQETVSQEDRKNERQTQEKRKQG--RTNEERSLGEAEQNKLKQLKTIDQLKDSKESDDAEQ 5075
             ...|.....:..:..:..::||:.:|  ..:||:: |.||.....: .|.|....||..|...:
  Rat    92 -APATSPKAEEPSKAGDAPSEEKKGEGDAAPSEEKA-GSAETESAAK-ATTDNSPSSKAEDGPAK 153

  Fly  5076 EKPEPMDQTEAEEYQHVKEPKNSDKTTLDNATEEQSKKIQHQEDEPPNE------EEIEAENVDE 5134
            |:|:..|...|.          :|......|.|:.:|..|     ||.|      .|.|.|.|||
  Rat   154 EEPKQADVPAAV----------TDAAATTPAAEDAAKAAQ-----PPTETAESSQAEEEKEAVDE 203

  Fly  5135 LMEAE-----EPAVDPEDDAE 5150
            ....|     |...|||.|.|
  Rat   204 AKPKESARQDEGKEDPEADQE 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13185NP_001097279.2 MDN1 298..5521 CDD:227596 67/281 (24%)
P-loop_NTPase 315..505 CDD:304359
P-loop_NTPase <887..972 CDD:304359
P-loop_NTPase 1147..1283 CDD:304359
P-loop_NTPase 1454..1603 CDD:304359
P-loop_NTPase 1795..1946 CDD:304359
P-loop_NTPase <2335..>2378 CDD:304359
Prothymosin 4843..4920 CDD:281265 5/22 (23%)
PHA03151 4856..5060 CDD:177546 37/178 (21%)
MttA_Hcf106 <5046..5166 CDD:294511 33/116 (28%)
vWA_midasin 5261..5526 CDD:238737
Gap43NP_058891.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..226 67/281 (24%)
IQ 30..52 CDD:197470 1/21 (5%)
Neuromodulin 73..226 CDD:284117 49/196 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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