DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13185 and lgc-57

DIOPT Version :9

Sequence 1:NP_001097279.2 Gene:CG13185 / 36268 FlyBaseID:FBgn0033661 Length:5526 Species:Drosophila melanogaster
Sequence 2:NP_496306.2 Gene:lgc-57 / 191636 WormBaseID:WBGene00001586 Length:473 Species:Caenorhabditis elegans


Alignment Length:525 Identity:103/525 - (19%)
Similarity:188/525 - (35%) Gaps:161/525 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  2504 MEVYVYSANTDLMGYGLSYYQNKLREVVLAQTEVF---EEVAVIQEDFLSDVI------LNSGNL 2559
            :::.:||                |.:.||.|.|.:   |.|..|:|||..|.:      :.:.|.
 Worm     6 LKILIYS----------------LMQCVLGQAEFWDYDENVTQIEEDFKIDDVTRILKRVGNYNR 54

  Fly  2560 NSLTLIKRQAVALKVLLDGYTEGKIPQKLLASLFH-EMEKLKLDQRNPQKLIRHFL-YMLYESSA 2622
            |:..|:. |.:|..|.:..|.||       .|.|| :....::|....:|.:.|.| :...:...
 Worm    55 NAYPLLD-QDLATHVDIQMYIEG-------MSSFHAQSMDFQVDIYFQEKWVDHRLQHNNTKRIL 111

  Fly  2623 IGDLELRHLYLQPWL----SKDTAFQELSQ-NL-----------YNCLQKRSNTDTGTLANLPWN 2671
            :.|.:|..|...|.|    ::..:|.:::| |.           |:|....:......||..|.:
 Worm   112 VKDPKLFGLLWHPDLYFANARTASFHDVTQPNFLVWIYPNGTVWYDCRISLTVLCMQDLARYPLD 176

  Fly  2672 RKLIPRLRDYSTAESNSEL-------NPLNLSALLLARLVVDIIPVSSVTTVQQMNALQYSQALC 2729
            .:.. .||..|.|....:|       ||               :.|:....:..|: |::.:...
 Worm   177 SQNC-GLRILSYAYDEEQLIIRWNGGNP---------------VEVNRGIRMPDMH-LKHIKFYT 224

  Fly  2730 KKQVTEKYANHL----LANFSSFLEVLHTSLLEDLETADLDLPQYAHLVTRFHWFNRILATAQQK 2790
            |:   :|||..:    :|.|....|:.|..:...:.|:         |:....||:         
 Worm   225 KR---DKYATGIWSSAVAEFHVDREITHHIIQSYIPTS---------LIVIISWFS--------- 268

  Fly  2791 LLYNNELHVPLMHKLVLHFQWLEKHL--------LVPLIELTAKSGCARMLTIQDRTLKIKKYIE 2847
                               .||:...        :..|:.|..:|..|||...|...:|      
 Worm   269 -------------------FWLDVEAVPGRVSLSITTLLTLATQSSAARMALPQASDVK------ 308

  Fly  2848 ETRRPLNV---TCK--IYSK--QFTQFQPYYQDQQIQRHIELDDL-EKLLSVVPSY--------- 2895
                .::|   ||.  ::|.  :||... |...::::..|:...| |::..:|..|         
 Worm   309 ----AIDVWMGTCMAFVFSAMIEFTVVN-YCVRRKVRTKIKPRGLSEQVHDMVAQYREKKDKFNN 368

  Fly  2896 GNLELSSWLKRWLLLQTDDANKWRSFLRKHTNGFQPKAFEISGSL----RNETLQSHLQKLQTTL 2956
            ||.|:|  .:..|....|:|...|:|.:|........:..:..||    :.:|::..:.:::...
 Worm   369 GNCEIS--YEMALQPNEDNATVQRNFEKKEVREMNQASLFVRRSLLPTSKRKTIEDRINRVEENR 431

  Fly  2957 KEAQE 2961
            |.||:
 Worm   432 KNAQK 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13185NP_001097279.2 MDN1 298..5521 CDD:227596 103/525 (20%)
P-loop_NTPase 315..505 CDD:304359
P-loop_NTPase <887..972 CDD:304359
P-loop_NTPase 1147..1283 CDD:304359
P-loop_NTPase 1454..1603 CDD:304359
P-loop_NTPase 1795..1946 CDD:304359
P-loop_NTPase <2335..>2378 CDD:304359
Prothymosin 4843..4920 CDD:281265
PHA03151 4856..5060 CDD:177546
MttA_Hcf106 <5046..5166 CDD:294511
vWA_midasin 5261..5526 CDD:238737
lgc-57NP_496306.2 Neur_chan_LBD 43..217 CDD:280998 38/198 (19%)
LIC 44..460 CDD:273305 89/471 (19%)
Neur_chan_memb 255..457 CDD:280999 42/232 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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