DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13185 and lgc-52

DIOPT Version :9

Sequence 1:NP_001097279.2 Gene:CG13185 / 36268 FlyBaseID:FBgn0033661 Length:5526 Species:Drosophila melanogaster
Sequence 2:NP_502839.3 Gene:lgc-52 / 190669 WormBaseID:WBGene00013517 Length:423 Species:Caenorhabditis elegans


Alignment Length:474 Identity:88/474 - (18%)
Similarity:164/474 - (34%) Gaps:175/474 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1681 FAEQAIFGLETIFLDA-------------------LEMLP-HESQEQVELLKSNIVKQAIKQ-AS 1724
            ::.||:| :|||.:.|                   |..|. .::.:...:|.:|..:.|:.: |.
 Worm     3 YSIQALF-IETILMSARIHDVTYQHIEDFTCDDIGLSSLSGAKATDLARILMTNYSRNALPEPAP 66

  Fly  1725 LILQEKFTLEELS--------------------EKRGTEVELNECRFGIRPFFIDVNQER----- 1764
            :.::.:.|::::|                    :||.....|:.||   :...:|.:.|.     
 Worm    67 VKVEVEITIQDISDISAITGTFTIDYWISAIWNDKRLAFSHLDPCR---KNLSLDHDMEPKLWSP 128

  Fly  1765 ---LTSAKEDFLFDAPTTKQNLFRLL---SALSLQKPVLLEGPPGVGKTSI-VESIGSAIGYQIV 1822
               :.::|...:.|:|  |.|:..::   ..:.|...:..|.|..:...:. ::||..::.::..
 Worm   129 NVCIVNSKSTKVHDSP--KPNILLMIFPNGTIWLNYRIRSEAPCQMNLRNFPLDSIRCSLVFESY 191

  Fly  1823 RINLCEHTDLADLFGTDLPAEDNLLESNTAATERQIRSFVWRDGPLLAALKAKNTWILLD--ELN 1885
            ..|..:             .|...||.:..:|.|                   |.:.|.|  ..|
 Worm   192 SYNAAD-------------VELQWLEWSPVSTVR-------------------NDYNLPDFRMTN 224

  Fly  1886 LAPQSVLEGLNAVLDHRGEVYIPELNKSFHLAGSTRIFACQNPLKQGGGRKGLPQSFLNRFTKVY 1950
            :...||.|...|.:.||       |:.|.|.   .|::...           :.|.:|..:..|:
 Worm   225 ITYGSVTEAYTAGMWHR-------LSVSIHF---ERLYGFY-----------ILQMYLPTYISVF 268

  Fly  1951 LR---------------KLSTEDLLHVVTEKYGK-------------------------YFDQLN 1975
            :.               .||...|: .:|.::|.                         :|..:.
 Worm   269 ISWIAFWMDTKALPARITLSVSSLM-ALTFQFGNIVKSLPKASYVKAIDIWMFSCVGFIFFSLIE 332

  Fly  1976 ----AYFLELLDQK------AEGNLFEIYSGKESSCKSDSF-DLGARLVRFSE---QLDRGVASM 2026
                ||..::.||:      :.|||.....|:.:|....|| :|.||..:.||   .:|| ||||
 Worm   333 LAIVAYNDKMHDQRLREVRCSVGNLNSNGIGQYNSTTRRSFVELSARRAKGSELGASIDR-VASM 396

  Fly  2027 EFGYKGGPYEFNLRDILRW 2045
            .|     |..|.|.:::.|
 Worm   397 LF-----PTMFALFNLVYW 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13185NP_001097279.2 MDN1 298..5521 CDD:227596 88/474 (19%)
P-loop_NTPase 315..505 CDD:304359
P-loop_NTPase <887..972 CDD:304359
P-loop_NTPase 1147..1283 CDD:304359
P-loop_NTPase 1454..1603 CDD:304359
P-loop_NTPase 1795..1946 CDD:304359 26/153 (17%)
P-loop_NTPase <2335..>2378 CDD:304359
Prothymosin 4843..4920 CDD:281265
PHA03151 4856..5060 CDD:177546
MttA_Hcf106 <5046..5166 CDD:294511
vWA_midasin 5261..5526 CDD:238737
lgc-52NP_502839.3 Neur_chan_LBD 45..248 CDD:280998 41/246 (17%)
LIC 52..413 CDD:273305 79/424 (19%)
Neur_chan_memb 259..>338 CDD:280999 8/79 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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