DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13185 and lgc-46

DIOPT Version :9

Sequence 1:NP_001097279.2 Gene:CG13185 / 36268 FlyBaseID:FBgn0033661 Length:5526 Species:Drosophila melanogaster
Sequence 2:NP_497338.2 Gene:lgc-46 / 175279 WormBaseID:WBGene00022106 Length:508 Species:Caenorhabditis elegans


Alignment Length:522 Identity:91/522 - (17%)
Similarity:172/522 - (32%) Gaps:173/522 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  2000 SCKSDSFDLGARLVRFSE-----------------------------QLDRGV------ASMEFG 2029
            :|.:|||.||..:..::.                             |||..:      .::.:.
 Worm    62 NCANDSFILGTIMSNYNRHKIPGGQVDVEVEVWVQEITTISDITSDFQLDIYIYETWYDPALNYA 126

  Fly  2030 YKGG-PYEFNLRDILRWCDLLHNPQTGYILGASPSSFQAAFKDFLLTLYERMQLVYYQRMR---- 2089
            :... .|..:|..:|  .:.|..|.:.:|...:....::.|.:..|.:|....:....|::    
 Worm   127 FMNPCKYNLSLNSVL--LEKLWTPNSCFINSKTADIHKSPFPNIFLMIYANGTVWTNYRLKLQGP 189

  Fly  2090 C--DQDKSYIRNVFSTVFLCDAEYLNQVSNDVALYWTA-------DKVYLNDVVLSRKQADVLDL 2145
            |  |..|....||..::..   |..|..:::|.:.|:.       ||:.|.|.       :::|:
 Worm   190 CIMDLTKFPFDNVTCSLTF---ESFNYNTDEVKMDWSVNGVQKMRDKMELADY-------ELVDI 244

  Fly  2146 --VNRQEQSP--------LLLDSQRQQLKQIIETVHMEKPLLLCGSTDSGK--TKLIDALCVLSN 2198
              :...|:.|        :..:.:|:....|:: .::...|.:|.|..|..  :|.|.|..:|. 
 Worm   245 HKIRTTEEYPAGYWHELTMSFEFKRRAGWYILQ-AYLPTYLTICISWISFALGSKAIPARTMLG- 307

  Fly  2199 RLCNTDIIDDSVTGSFQQIDLNRHL-EIIY-KKVETLVFSCVQRAFVLHTQSEFVEQLWNNWSMY 2261
                   ::..:..:||..::.|:| .:.| |.::..:.||:  .||      |...|...|..|
 Worm   308 -------VNSLLAMTFQFGNIIRNLPRVSYVKAIDVWMLSCM--TFV------FCSLLELAWVGY 357

  Fly  2262 NKLAKVTTEAQ--QHSVLDELKLFSERLGSLGKIIEVLEATPQNCQVRALQQLAEIKSQLLLLQT 2324
            ....:..|.|:  |.|.                     :..|:.|....:||.|...|      .
 Worm   358 LSREEEPTSAKCLQPSA---------------------QVAPKPCHPPPVQQNANNSS------V 395

  Fly  2325 YIKTADSLNTGGSFEWVDSQIVTSLKCGQYILLEHVNLCSSAVLDRLNPVFEPNGSLLIAEKGIS 2389
            :.:.....|.       :...:.||:...|              ..:.|.|..||::..|.|..|
 Worm   396 HRRQKQPKNE-------EESALLSLRDNDY--------------GYIPPGFGLNGNVANAMKSFS 439

  Fly  2390 AQ-------------DSAEVVYKSTNFRAFLTVDPKNGELSRAMRNRCVELSLSRDTYSVDDLRA 2441
            :.             |.||.:..||           :..|||..|...:       .:.:|.:..
 Worm   440 SSCSCEPTNVVNLMLDEAETIPTST-----------SSSLSRKQRREIL-------AHKIDSVSV 486

  Fly  2442 FV 2443
            |:
 Worm   487 FM 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13185NP_001097279.2 MDN1 298..5521 CDD:227596 91/522 (17%)
P-loop_NTPase 315..505 CDD:304359
P-loop_NTPase <887..972 CDD:304359
P-loop_NTPase 1147..1283 CDD:304359
P-loop_NTPase 1454..1603 CDD:304359
P-loop_NTPase 1795..1946 CDD:304359
P-loop_NTPase <2335..>2378 CDD:304359 5/42 (12%)
Prothymosin 4843..4920 CDD:281265
PHA03151 4856..5060 CDD:177546
MttA_Hcf106 <5046..5166 CDD:294511
vWA_midasin 5261..5526 CDD:238737
lgc-46NP_497338.2 Neur_chan_LBD 73..504 CDD:332142 85/511 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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