DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sln and kar

DIOPT Version :9

Sequence 1:NP_610706.1 Gene:Sln / 36263 FlyBaseID:FBgn0033657 Length:855 Species:Drosophila melanogaster
Sequence 2:NP_001189213.1 Gene:kar / 45883 FlyBaseID:FBgn0001296 Length:612 Species:Drosophila melanogaster


Alignment Length:665 Identity:112/665 - (16%)
Similarity:204/665 - (30%) Gaps:253/665 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 KDRDSSTTTTESGGPNV----------------EPPDGG-YGWFIVFGAFSVQFWVAGLVKSYGV 254
            ||....:...::|..|.                |||||| ..|.::..||.....:.|.:.:|||
  Fly    39 KDAMKPSAPVQNGNGNANGTHIEAPCCRDIHGKEPPDGGARAWLVMVSAFLCNGIIFGFINTYGV 103

  Fly   255 LYVEIMETFPSSTATVASWIPAILSALCL----VLAPLSSALCQRFSCRTVVFVGGIFCAMGMIL 315
            ::..:.:.........||...|::.||.:    :.:.::..|..:...|...|.||:..|.|::|
  Fly   104 IHSLLTDRLTKLGDPEASSKAALIGALAIGTTFLFSTMAGCLTDKIGLRLTTFAGGVLSAGGLLL 168

  Fly   316 SYFAT-SLLHLLLTFGVLTGIGGGLSTTPGIVIVSQYFDKHRALANGICVSGTAAGSFILPVLIK 379
            |.|.| ::..|..|:|::.|:|..|:.||.:.|:..||.::....:|...:|::..:.|||..:.
  Fly   169 SSFCTENIGALYFTYGIMFGLGAALAYTPTLAILGHYFKRYLGKVSGFVTAGSSVFTVILPPCLD 233

  Fly   380 HLAENCGFHGTILILGGCMLHVCVSATLYRPISAYTDQDSGQGQEETAKPLNEDINPSTTGILTT 444
            .|..:.|..||:.|:.                                               ..
  Fly   234 KLLGSYGLEGTLRIMS-----------------------------------------------LV 251

  Fly   445 STYLDTCDVGAGHELSDKFIEHLFLEESKNHLNYYASKQPAQDKSAQESDDEVKDIIGETTFIKP 509
            |.::..|                                                          
  Fly   252 SAFIILC---------------------------------------------------------- 258

  Fly   510 MKKVRSSGLLHSVEDLSTDSTWVYRKHSGTDSNRGSRRRRNVFANDEVISKIQAHLEKPLSPPSV 574
                                ::||                                 |||.||  
  Fly   259 --------------------SFVY---------------------------------KPLHPP-- 268

  Fly   575 VSRGLSKSMEIPTPVSNLSDLKQQPVEQAELGILDSQLVESIIDGDGHLAADEDDDDDEERGPRT 639
                       |.|.      |::|..                                      
  Fly   269 -----------PEPP------KKKPGR-------------------------------------- 278

  Fly   640 CCERIEMYL----DISLLQDPSFILMCLSVTLMSVGCPYMLYYLP-AHV---ISIGYNKSEAGYL 696
              .||.::|    ::.:.:...|::..|.|.|...|     |::| .|:   :...:...:....
  Fly   279 --SRINLFLRSIINVEIWKRKRFVIWALCVPLALFG-----YFVPYVHMMQFVKTTFPGEDVNLP 336

  Fly   697 VAISAVLDLIGRLGLGWLCDLQLFDRKKTYTLCILGAGCAVLTIPFAKTLVLVGLSAAVYGLCLG 761
            |....:...||||..|.:.|:...:|.....|.::..|...|.:|...:.|::.....|.||..|
  Fly   337 VMCIGITSGIGRLIFGVIADMPGVNRMYLQQLSLVSIGLVTLLLPLTNSYVILVSFTLVMGLFDG 401

  Fly   762 SWYVLMPVLLADVFGTDRISSSYGLVRMFQSIGAISVPPLAGLMRDLSGDYEICFYCMGSCMVLG 826
            .:..|:..:..::.|....:.:.|.:....||.....||:||::.|.:..|.:.....|...:||
  Fly   402 CFISLLGPIAYEICGPSGATQAIGFLLGLSSIPLTVGPPVAGMIFDSTNSYTLPLILAGLPPLLG 466

  Fly   827 TTPL-IVWSILEARN 840
            ::.| ::..:.|..|
  Fly   467 SSLLFLIKCVKEEEN 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlnNP_610706.1 MFS 235..>411 CDD:119392 43/180 (24%)
MFS <656..827 CDD:119392 38/174 (22%)
MFS_1 658..>847 CDD:284993 42/188 (22%)
karNP_001189213.1 MFS 81..459 CDD:119392 96/599 (16%)
MFS_1 124..439 CDD:284993 81/536 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 72 1.000 Domainoid score I2205
eggNOG 1 0.900 - - E1_KOG2504
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.920

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