DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sln and chk

DIOPT Version :9

Sequence 1:NP_610706.1 Gene:Sln / 36263 FlyBaseID:FBgn0033657 Length:855 Species:Drosophila melanogaster
Sequence 2:NP_001163063.1 Gene:chk / 35578 FlyBaseID:FBgn0033095 Length:894 Species:Drosophila melanogaster


Alignment Length:811 Identity:202/811 - (24%)
Similarity:335/811 - (41%) Gaps:184/811 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 GSGLNTARSRCVRRAK-ERERDRVT--------VARRSKQVVKDRDSS--TTTTESGGPNVEPPD 227
            |:|    .||.||.:. |.|...:|        |.||.:.:..:...|  :::||...|.:  ||
  Fly    76 GAG----HSRVVRSSVIELEDGTMTCLMNGNGQVKRRKRLISNESGDSIDSSSTEKKTPKM--PD 134

  Fly   228 GGYGWFIVFGAFSVQFWVAGLVKSYGVLYVEIMETFPSSTATVASWIPAILSALCLVLAPLSSAL 292
            |||||.:||.:..|.....||..|:|::.||::|.|..||:..| ||.::..::.|::.|:.|.|
  Fly   135 GGYGWVVVFASLVVSLIADGLSFSFGLINVELLEYFGESTSKTA-WISSLFFSVPLLMGPIWSNL 198

  Fly   293 CQRFSCRTVVFVGGIFCAMGMILSYFATSLLHLLLTFGVLTGIGGGLSTTPGIVIVSQYFDKHRA 357
            ..::.||.:..:||:..|.|..||.|..|:..|::|||:::|:|.|:.....:|.::.:|||.|.
  Fly   199 VDKYGCRKMTILGGVVSAFGFALSSFCNSIEMLMVTFGIISGLGLGIGYVTAVVSIAFWFDKKRT 263

  Fly   358 LANGICVSGTAAGSFILPVLIKHLAENCGFHGTILILGGCMLHVCVSATLYR------------- 409
            .|.||..|||..|:|:...|..:|.|:.|:.|..|||||.||:.||...|.|             
  Fly   264 FATGIGASGTGIGTFVYARLTSYLIESYGWRGATLILGGTMLNACVCGALMRDPDWLIEENRLES 328

  Fly   410 ---PISAYTDQ-----------DSGQGQEETAKPL----NEDINPSTTGILTTS----------- 445
               .::.:::.           |:|..:|.....|    |.:.|......|.::           
  Fly   329 RSQSVTTFSNSSVCLEEIKKLLDTGITKEAVLDSLVTKNNTEANQQIDDPLDSALKRYRSEIFLP 393

  Fly   446 TYLDT------CDVGAGHELSDKFIEHLFLEESKNHLN--------------------------- 477
            |:|.|      |:|   ..||.:.:.|...||:.:..|                           
  Fly   394 TFLSTQELDSICEV---KSLSRRSLRHKEGEEAPSRENLLSMSSGAGAYPPSTAVIGSPDDTLMG 455

  Fly   478 -------------YYASKQ---PAQDKS-------AQESDDE---------VKDIIGETTFI--- 507
                         |.||.:   |::.:|       :..|.||         .:..:.|..|:   
  Fly   456 GIAHEAAEEAKKAYLASIETLSPSEKRSTGRTPNGSLRSSDEGYLTQKHASSRYSLNENIFMAKH 520

  Fly   508 --KPMKKVRSSGLLH-SVEDLSTDSTWVYRKHSGTDSNRGSRR-RRNVFANDEVISKIQAHL--- 565
              ..:..::.:||.| ||:.||.|....|.|.........||| |..|.|..|....:.:.|   
  Fly   521 TTPSISNLKVNGLRHNSVDILSEDMHCYYSKDETFALLEPSRRIRPTVIAIPEQEQSVNSELATR 585

  Fly   566 ----------------EKPLSPPSVVSRGLSKSMEIPTPVSNLSDLKQQPVEQAELGILDSQL-- 612
                            :||....|.:.|.:|        :.|.:.||...:.:..:....:.|  
  Fly   586 RARLDSITGIRRLSRSKKPSHHRSNLRRNIS--------IRNSNFLKDMRIHRNSIHYRGAMLNT 642

  Fly   613 ---------VESIIDGDGHLAADEDDDDDEERGPRTCCERIEMYLDISLLQDPSFILMCLSVTLM 668
                     ..:|........|.|::|...:    ...:.::...|.||..|..|.|..||...:
  Fly   643 HRYRLRASSCPNIYRNSMTTIAKEEEDTWYD----NFVDTMKSIFDFSLFLDMKFALFNLSTLFL 703

  Fly   669 SVG--CPYMLYYLPAHVISIGYNKSEAGYLVAISAVLDLIGRLGLGWLCDLQLFDRKKTYTLCIL 731
            .:.  .||:  |||.::....|:.|::..|::...:...:|.:|||:|.||...:....|:||:|
  Fly   704 FIWFIIPYL--YLPDYMKQYKYDVSQSAELISDVGIAQTVGMIGLGYLGDLSWMNINICYSLCML 766

  Fly   732 GAGCAVLTIPFAKTLVLVGL--SAAVYGLCLGSWYVLMPVLLADVFGTDRISSSYGLVRMFQSIG 794
            ..|.:|..:|...|..: ||  ...::|....|.:...|.:|..:...|..:.:||||.:.|.:|
  Fly   767 VCGASVFFMPLLITNYM-GLMVMCVIFGFTFASSFSFTPSILVSIVDLDDFTCAYGLVLLVQGVG 830

  Fly   795 AISVPPLAGLMRDLSGDYEICFYCMGSCMVL 825
            .|:.||:||::.:.:|.::..||..|..:.|
  Fly   831 MIAGPPIAGVIYEYTGRWDDTFYYAGIFIAL 861

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlnNP_610706.1 MFS 235..>411 CDD:119392 66/191 (35%)
MFS <656..827 CDD:119392 50/174 (29%)
MFS_1 658..>847 CDD:284993 50/172 (29%)
chkNP_001163063.1 MFS 143..>315 CDD:119392 64/172 (37%)
MFS <685..869 CDD:119392 53/180 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I4618
eggNOG 1 0.900 - - E1_KOG2504
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 117 1.000 Inparanoid score I274
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 1 1.000 - - mtm13433
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
87.960

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