DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sln and hrm

DIOPT Version :9

Sequence 1:NP_610706.1 Gene:Sln / 36263 FlyBaseID:FBgn0033657 Length:855 Species:Drosophila melanogaster
Sequence 2:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster


Alignment Length:688 Identity:205/688 - (29%)
Similarity:323/688 - (46%) Gaps:91/688 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 SKQVVKDRDSSTTTTESGGPNVE-------------PPDGGYGWFIVFGAFSVQFWVAGLVKSYG 253
            ||...||...:..|.||....|.             |||||:||.::.|:......:.|.:||:|
  Fly    13 SKINQKDHKPNGNTNESRHKTVSLINKKDDKEYDLVPPDGGWGWLVLLGSCLTNILIPGTIKSFG 77

  Fly   254 VLYVEIMETFPSSTATVASWIPAILSALCLVLAPLSSALCQRFSCRTVVFVGGIFCAMGMILSYF 318
            ||:.|..:.| :|:.|.|:||||:...|...|.|:||.|..::|.|||..:||...::|||||::
  Fly    78 VLFSEFTDAF-NSSPTKAAWIPALCYFLYSSLGPVSSILSVKYSYRTVTLLGGASASLGMILSFW 141

  Fly   319 ATSLLHLLLTFGVLTGIGGGLSTTPGIVIVSQYFDKHRALANGICVSGTAAGSFILPVLIKHLAE 383
            |:|:..|.:::|||.|||.|||..|.:.||:.||.|.|.||||:|:||:|.||.|||.|::.|.|
  Fly   142 ASSIEFLYISYGVLVGIGAGLSFPPTVYIVTSYFAKLRGLANGLCISGSALGSIILPPLLRWLLE 206

  Fly   384 NCGFHGTILILGGCMLHVCVSATLYRPISAYTDQDSGQGQEETAKPLNEDINPSTTGILTTSTYL 448
            ..|:||:.||:||..|:|.|:|..|.|:..:..:.....|.....|..|||     ||:.....:
  Fly   207 TYGYHGSCLIMGGITLNVFVAALFYEPVEQHMVRVPRARQALENIPEEEDI-----GIVMKFENV 266

  Fly   449 DTCDVGAGHELSDKFI-------EHLFLEESKNHLNYYASKQPAQDKSAQESDDEVKD---IIGE 503
            |  :....:|.:||.:       ..|:| .....|.:..|...|..:|..:|.||.:.   .|..
  Fly   267 D--EPVPKNEPADKPLLPYNSPPSPLYL-PGDERLQFVRSASAAVVQSYSKSGDEFQSRSRKIST 328

  Fly   504 TTFIKPMKKVRSSGLLHSVEDLSTDSTWVYRKHSGTDSN-----RGSRRRRNVFANDEVISKIQA 563
            ...:....:..:.|.|:|...|       |....|..|:     |.|.:.|        :||   
  Fly   329 PVRLPQRNQTFTPGQLNSQSSL-------YAVPEGRSSSNKLTLRNSSKSR--------LSK--- 375

  Fly   564 HLEKPLSPPSVVSRGLSKSMEIPTPVSNLSDLKQQPVE---QAELGILDSQLVESIIDGDGHLAA 625
                  ..||.     |..:.:.||... |.|..||.|   ...|..:.|       .|.||...
  Fly   376 ------RSPST-----SSFLYVSTPYHG-STLSFQPKEFSSHLSLRSMGS-------SGTGHAGD 421

  Fly   626 DEDDD----DDEERGPRTCCERIEMYLDISLLQDPSFILMCLSVTLMSVGCPYMLYYLPAHVISI 686
            ....|    |.:.||.....:| ..:.|:|||:||.::::.:|.:..::.....:..||:...:.
  Fly   422 STGQDGSYADVDARGQAQQPQR-SKFFDLSLLKDPMYLVILISNSTNAISYTNFIILLPSFGEAR 485

  Fly   687 GYNKSEAGYLVAISAVLDLIGRLGLGWLCDLQLFDRKKTYTLCILGAGCAVLTIPFAKTLVLVGL 751
            |:|||.:.||:::.:..|||||:|...|.|:....:...:...:..:|.::..:|||.|...|..
  Fly   486 GFNKSLSAYLLSVVSATDLIGRIGGSALSDMGYIPKTWYFVGGLSISGLSLALLPFAWTYSSVCF 550

  Fly   752 SAAVYGLCLGSWYVLMPVLLADVFGTDRISSSYGLVRMFQSIGAISVPPLAGLMRDLSGDYEICF 816
            ..|::||..|.:..:..|::||:.||:|::||||:......:..:..|||.....:...||...|
  Fly   551 WCALFGLASGIYVGITAVIMADMLGTERLTSSYGISLFVNGLLQLVGPPLCNYWFEAVNDYNPLF 615

  Fly   817 YCMGSCMVLGTTPLIVWSILEARNHRLFVQREEEECEE 854
            :.:|..::.|.:   :||.:.      ::.|.:...||
  Fly   616 HALGLTLLAGAS---LWSFMP------WINRRKANAEE 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlnNP_610706.1 MFS 235..>411 CDD:119392 80/175 (46%)
MFS <656..827 CDD:119392 45/170 (26%)
MFS_1 658..>847 CDD:284993 47/188 (25%)
hrmNP_001286141.1 2A0113 49..653 CDD:273325 197/652 (30%)
MFS 59..>234 CDD:119392 80/175 (46%)
MFS <449..633 CDD:119392 52/186 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I4618
eggNOG 1 0.900 - - E1_KOG2504
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 117 1.000 Inparanoid score I274
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122935at6656
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 1 1.000 - - mtm13433
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
98.970

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