DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sln and CG8028

DIOPT Version :9

Sequence 1:NP_610706.1 Gene:Sln / 36263 FlyBaseID:FBgn0033657 Length:855 Species:Drosophila melanogaster
Sequence 2:NP_001097031.2 Gene:CG8028 / 32923 FlyBaseID:FBgn0031010 Length:563 Species:Drosophila melanogaster


Alignment Length:686 Identity:151/686 - (22%)
Similarity:265/686 - (38%) Gaps:169/686 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 VTVARR--SKQVVKDRDSSTTTTESGGPNVEPPDGGYGWFIVFGAFSVQFWVA-GLVKSYGVLYV 257
            :|:..|  |:...:.:.|.:.|       :|.||||:|..:..| .::.|..| ..:.|:|:::.
  Fly     9 LTIEHRLQSRPAYQMKKSKSYT-------LEAPDGGWGILVCIG-MALPFTSALAALPSFGLVFG 65

  Fly   258 EIMETFPSSTATVASWIPAILSALCLVLAPLSSALCQRFSCRTVVFVGGIFCAMGMILSYFATSL 322
            |.:::..:.|:.:|....|..|::... ...|.:|.|||..|.|...|||...:|..:..||||.
  Fly    66 EFLKSIGAETSAMAIITSAFFSSMSFA-GLFSGSLFQRFGMRQVGVTGGILYFLGTGMQLFATST 129

  Fly   323 LHLLLTFGVLTGIGGGLSTTPGIVIVSQYFDKHRALANGICVSGTAAGSFILPVLIKHLAENCGF 387
            |||::.|.|:.|...||.........:.||.|:|.:......:....||.:.|::::.|....||
  Fly   130 LHLIMAFSVVQGFAFGLMVPTCYTTFNHYFVKNRVMWMSFAQTLIGLGSMLYPIVMQKLMSWYGF 194

  Fly   388 HGTILILGGCMLHVCVSATLYRPISAYTDQDSGQGQEETAKPLNEDINPSTTGILTTSTYLDTCD 452
            .|.:|||.|...|......:..|:                                         
  Fly   195 RGCLLILTGLNAHAVFGMLVMHPV----------------------------------------- 218

  Fly   453 VGAGHELSDKFIEHLFLEESKNHLNYYASKQPAQDKSAQESDDEVKDIIGETTFIK-----PMKK 512
                                    .::..:.|.|    .|..:|:|: :..|..|:     |:|.
  Fly   219 ------------------------EWHMRRVPIQ----PEEQEELKE-LSPTVVIRVQPETPLKA 254

  Fly   513 VRSSGLLHSVEDLSTDSTWVYRKHSGTDSNRGSRRRRNVFANDEVISKIQAHLEKPLS--PPSVV 575
            .|.....|:.:.                   |:|:          :|..:..:.|.||  ..|:.
  Fly   255 TREEPNFHTADP-------------------GARK----------LSHAEEQMLKVLSSRASSIT 290

  Fly   576 SRGLSKSMEIPTPVSNLSDLKQQPVEQAELGILDSQLVESIIDGDGHLAADEDDDDDEERGPRTC 640
            |.|   :...|..||:.|       .|....:..|:...:|....|.:|       ......::.
  Fly   291 SLG---NWSGPVVVSDAS-------PQMMHSLQTSRRPSTIAGASGAVA-------PAHATKKSW 338

  Fly   641 CERIEMYLDISLLQDPSFILMCLSVTLMSVGCPYMLY-------YLPAHVISIGYNKSEAGYLVA 698
            ...|..:||::||:.|.|:.:.|.:|       :.||       ..|.::..:||::.:...::|
  Fly   339 VRTIVDFLDLTLLKKPIFVNIVLGIT-------FALYSDITFFTMQPVYLFELGYSRPDTATIIA 396

  Fly   699 ISAVLDLIGR--LGLGWLCDLQLFDRKKTYTLCILGAGCAVLTIPFAK-----TLVLVGLS--AA 754
            |.|..||..|  |.:..:| :|:..|      .|..|| ||.|: ||:     ....||::  .|
  Fly   397 IGAAADLASRIFLAITAVC-IQVPSR------YIYLAG-AVFTV-FARFAFNGITQFVGMACITA 452

  Fly   755 VYGLCLGSW-YVLMPVLLADVFGTDRISSSYGLVRMFQSIGAISVPPLAGLMRDLSGDYEICFYC 818
            |.|. |.:| :|.:|::.||....:|.::.|||....|......:.|:.|.:||.:.||...|:.
  Fly   453 VIGF-LRTWLHVPLPLVFADYLPKERFATGYGLFMFIQGNAMFLIGPIVGFIRDKTRDYIFVFHI 516

  Fly   819 MGSCMVLGTTPLIVWSILEARNHRLFVQREEEECEE 854
            :...|:|...|.::..::.....|..::|...:.|:
  Fly   517 LNGFMILCAAPWVLEVLIVKFRRRNKIERNNVDHED 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlnNP_610706.1 MFS 235..>411 CDD:119392 49/176 (28%)
MFS <656..827 CDD:119392 52/187 (28%)
MFS_1 658..>847 CDD:284993 53/205 (26%)
CG8028NP_001097031.2 MFS 40..>215 CDD:119392 49/176 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
54.920

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