DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sln and slcf-1

DIOPT Version :9

Sequence 1:NP_610706.1 Gene:Sln / 36263 FlyBaseID:FBgn0033657 Length:855 Species:Drosophila melanogaster
Sequence 2:NP_509762.2 Gene:slcf-1 / 186633 WormBaseID:WBGene00010340 Length:450 Species:Caenorhabditis elegans


Alignment Length:356 Identity:75/356 - (21%)
Similarity:129/356 - (36%) Gaps:45/356 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 VTVARRSKQ-VVKDRDSSTTTTESGGPNVEPPDGGYGWFIVFGAFSVQFWVAGLVKSYGVLYVEI 259
            :|:.|.::| |.:.|...|..........:|.:....|..:.| |.:.|...|:.:........:
 Worm     1 MTIERATRQNVRRGRPPGTRRAVVFDDTPQPSEWRNIWVAICG-FYILFAETGVRQVMNGFVEPV 64

  Fly   260 METFPSSTATVASWIPAILSALCLVLAPLSSALCQRFSCRTVVFVGGIFCAMGMILSYFATSL-L 323
            ::|:..:.....:.:..:..|..|:|.|..|...||...|..:..|........::..|..:: |
 Worm    65 IKTYNCTKDQADTAVLVVPMASSLILGPFCSIFYQRSGARISIIAGSFLTGGSFVVGPFCKNIYL 129

  Fly   324 HLLLTFGVLTGIGGGLSTTPGIVIVSQYFDKHRALANGICVSGTAAGSFILPVLIKHLAENCGFH 388
            .:|.|||:  |||.||.....|.|..:||.|.|.........|...|.||||..:|.:.......
 Worm   130 LMLATFGM--GIGCGLMRNSIISIQCEYFKKKRNTVMAAISIGPGLGIFILPRTLKFIMVKYNSW 192

  Fly   389 GTILILGGCMLHVCVSAT----LYRPISAYTDQDSGQGQEETAKPLNEDINPSTTGILTTSTYLD 449
            |.....  ..|...|||.    :.:|.|..|...|.....:..|.|..|::.......::..::.
 Worm   193 GPAWWF--LSLFYIVSAIMGLFITKPPSEQTSTFSFGSAFKVCKKLEFDLHLIACFFASSVMFIY 255

  Fly   450 TCDVGAGHELSDKFIEHLFLEESKNHLNYYASKQPAQDKSAQESDDEVKDIIGE--TTFIKPMKK 512
            ..::             |.|.||:|          .:||........:..|.|:  .||:..:.|
 Worm   256 IANI-------------LILMESEN----------IEDKEILYGYQGLTSIAGKFVLTFVMSLNK 297

  Fly   513 VRSSGLL---HSVEDLSTDST------WVYR 534
            |.:..::   :.:..||..:.      |.:|
 Worm   298 VHNGIIMILSYVIAQLSLSAAAFCYKFWQFR 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlnNP_610706.1 MFS 235..>411 CDD:119392 43/180 (24%)
MFS <656..827 CDD:119392
MFS_1 658..>847 CDD:284993
slcf-1NP_509762.2 MFS 44..410 CDD:119392 66/312 (21%)
MFS_1 79..376 CDD:284993 62/277 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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