DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sln and mct-2

DIOPT Version :9

Sequence 1:NP_610706.1 Gene:Sln / 36263 FlyBaseID:FBgn0033657 Length:855 Species:Drosophila melanogaster
Sequence 2:NP_503681.2 Gene:mct-2 / 182056 WormBaseID:WBGene00015273 Length:544 Species:Caenorhabditis elegans


Alignment Length:664 Identity:150/664 - (22%)
Similarity:257/664 - (38%) Gaps:170/664 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 ERERDRVTVARRSKQVVKDRDSSTTTTESGGPNVEPPDGGYGWFIVFGAFSVQFWVAGLVKSYGV 254
            :.|:..||||      |...::.....|..| .|.||||||||.:|..:|.|...|.|::.:.|.
 Worm    11 DAEKKEVTVA------VTAAENFEEQVEEVG-KVTPPDGGYGWVVVAASFLVNMAVDGVIYTCGK 68

  Fly   255 LYVEIMETFPSSTATVASWIPAILSALCLVLAPLSSALCQRFSCRTVVFVGGIFCAMGMILSYFA 319
            :.|.|......|| :||..:.:||:....:..||:|:....|..|:|...|.|......:||.||
 Worm    69 ILVPIWADQFGST-SVAGAVISILTGCYYLAGPLASSFVNVFGIRSVAIAGSILATTAFLLSRFA 132

  Fly   320 TSLLHLLLTFGVLTGIGGGLSTTPGIVIVSQYFDKHRALANGICVSGTAAGSFILPVLIKHLAEN 384
            :::..|.|.||||.|||.|....|.|||:|.||.|.|::|.||.|.|:..|:.:...:...:.:.
 Worm   133 STIWELYLLFGVLGGIGFGCMYLPSIVILSTYFAKKRSVATGIAVCGSGIGTMVFSTINGPVFDY 197

  Fly   385 CGFHGTILILGGCMLH---VCVSATLYRPISAYTDQDSGQGQEETAKPLNEDINPSTTGILTTST 446
            .|..     :|..|::   :.:|.:|:..:.|               ||                
 Worm   198 FGKD-----VGSFMVYLAAIAISGSLFSLLFA---------------PL---------------- 226

  Fly   447 YLDTCDVGAGHELSDKFIEHLFLEESKNHLNYYAS-KQPAQDKSAQESDDEVKDIIGETTFIKPM 510
                           |..||...:.:|...||... ::|.|                     :.:
 Worm   227 ---------------KATEHQVKKVAKMVRNYEGKPEEPTQ---------------------RLL 255

  Fly   511 KKVRSSGLLHSVEDLSTDSTWVYRKHSGTDSNRGSRRRRNVFANDEVISKIQAHLEKPLSPPSVV 575
            :.||     :.:|:|                ||........:|.:..:|:               
 Worm   256 EDVR-----NDLEEL----------------NRPGHNADTFYAGNAPVSR--------------- 284

  Fly   576 SRGLSKSMEIPTPVSNLSDLKQQPVEQAELGIL---DSQLVESIIDGDGHLAADEDDDDDEERGP 637
                          |..:.|.::..|.||..::   :...|..::.........|          
 Worm   285 --------------SRSNTLDRKAAESAEAHVVHATEHHTVHHVVKKSKFTKFKE---------- 325

  Fly   638 RTCCERIEMYLDISLLQDPSFILMCLS--VTLMSVGCPYMLYYLPAHVISIGYNKSEAGYLVAIS 700
             :.|.    .||..||..|||:.:.:|  .|::|...|::...|.....:..:..:|....|.:.
 Worm   326 -SLCS----VLDKDLLFSPSFMTLAVSGTFTVLSFLVPFVYLALAMKQKNPDFTDAELSLPVTLI 385

  Fly   701 AVLDLIGRLGLGWLCDLQLFDRKKTYTLCILGAGCAVLTIPFAKTL-----VLVGLSAAVYGLCL 760
            ...:::.|:|.|.:.|.......:...:..:.||.::|.:||...|     ..:..||.|  .|.
 Worm   386 GAFNIMFRIGCGMVADHPKMSALQVSNVATIIAGTSMLFVPFCTELWHYVVFCIPFSAGV--ACF 448

  Fly   761 GSWYVLMPVLLADVFGTDRISSSYGLVRMFQSIGAISVPPLAGLMRDLSGDYEICFYCMG----- 820
            .:   |..|:..::.|.:::|:::|::.:|..|||:...|:|..::|::|:|:|.||.||     
 Worm   449 AA---LRSVICVELIGVEKLSNAFGILMVFMGIGAVVGGPIAAQIKDITGNYDISFYVMGIIFAF 510

  Fly   821 -SCMVLGTTPLIVW 833
             ..|.:....|..|
 Worm   511 SGVMTIRLPELKAW 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlnNP_610706.1 MFS 235..>411 CDD:119392 56/178 (31%)
MFS <656..827 CDD:119392 44/183 (24%)
MFS_1 658..>847 CDD:284993 44/189 (23%)
mct-2NP_503681.2 MFS_MCT_SLC16 45..519 CDD:340910 133/616 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158599
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.750

Return to query results.
Submit another query.