DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sobp and Rai2

DIOPT Version :9

Sequence 1:NP_001286320.1 Gene:Sobp / 36260 FlyBaseID:FBgn0033654 Length:813 Species:Drosophila melanogaster
Sequence 2:NP_001096837.1 Gene:Rai2 / 24004 MGIID:1344378 Length:529 Species:Mus musculus


Alignment Length:539 Identity:121/539 - (22%)
Similarity:193/539 - (35%) Gaps:170/539 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   326 DMHPHLRDQAMDAGSEAGLITPDLWLRNCRSRSASPASTLSVSPGPPPAPAVSRCPDSPPSHHPS 390
            |..|.|.:..:: ...|.|||.:.|  |..|......:.::|     |||::.    :||:...|
Mouse    15 DSPPTLANNRLE-NRMAQLITTEAW--NINSTDLVKKALVTV-----PAPSIL----NPPAESQS 67

  Fly   391 KPLISVAP--VSKLLAQKSPGPGP------GAPPPPPPPVQRHLAGKLGRRKRRGISSSLGSETV 447
            ...:.||.  :..|...:||...|      |:..|...|                    .|:.|.
Mouse    68 GMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNP--------------------NGNATY 112

  Fly   448 ASLLQKQQQ-----QQAPQQHQAPPTLTADFGGSSVPLPPLSPMPS-------MQEAPQQQQAPQ 500
            ....|...|     :|...||...|.:          ||..:|..|       .|.|...:..||
Mouse   113 VMTTQGPVQLPVVLEQHVFQHLNSPLV----------LPQEAPCSSNAIHNNLFQGAEDSEAQPQ 167

  Fly   501 V----PPTQALPRGPTAIPASYFATPSNGVPMG-HPFAGRPPPPPHHFMHPPPHGMMPRGFGPHF 560
            :    .|:|  |:.|        |.|...|... .|..|...|||   ..|||      |:.   
Mouse   168 LLDLRIPSQ--PQEP--------ALPFEAVLQNLFPTQGSLGPPP---CQPPP------GYA--- 210

  Fly   561 GPPLPPQMPELGSLLGAVPPVTVMVPYPIIIPLPIPIPVPLPVIDFYKAHLTPEERKRFDEQRAA 625
              |:||| |....|...|||.|::||||:|:|||:|:|:|:||       ..|:.    .|.:.:
Mouse   211 --PVPPQ-PFNSPLSPLVPPATLLVPYPVIVPLPVPVPIPIPV-------PVPQS----TESKFS 261

  Fly   626 PT--------------RAENAEEQEQPQPLDCSKSRSELEEEKPDVEKLSEPGQELDNDQEEDEK 676
            ||              ..:...|:::.:|||..:|:...:..:..|.|:....:.||...     
Mouse   262 PTFPKPPSSFGLHSFKGTQTTLEKDELKPLDILQSKEYFQLSRHTVIKMGSENEALDLSM----- 321

  Fly   677 ESIPKTNPDGDTNAASPSISQESSS------------SPQQTHCIVRDSTQSEPEADNQKLPKLK 729
            :|:|...    ...|||.:.||.::            :|.:|  :..:|..::.:..        
Mouse   322 KSVPWLK----AGEASPPVFQEDAALDLSLAAHRKAEAPPET--LYNNSGSADIQGH-------- 372

  Fly   730 ITRLQTKRTLIQTKEAAAECSRPLRKRKRIIDCDFQKMGLKEPEMANDGEQSNGSSNKEADADPE 794
             |.|:...:.::...|.|:||              :...:.|...:|    |||:......:.|.
Mouse   373 -TILEKLSSGMEMPFAPAKCS--------------EASAMMESHSSN----SNGTEMVSQPSHPG 418

  Fly   795 AECNMSGS---HSNSGSAK 810
            :|.....:   .|.|.:||
Mouse   419 SELKAENNIEILSESQAAK 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SobpNP_001286320.1 Ribosomal_L24e_L24 275..312 CDD:294589
SOBP 278..587 CDD:291927 69/285 (24%)
Rai2NP_001096837.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21 2/5 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 400..419 5/22 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831371
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23186
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.030

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