DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sobp and si:ch211-161f7.2

DIOPT Version :9

Sequence 1:NP_001286320.1 Gene:Sobp / 36260 FlyBaseID:FBgn0033654 Length:813 Species:Drosophila melanogaster
Sequence 2:XP_017213831.1 Gene:si:ch211-161f7.2 / 101883987 ZFINID:ZDB-GENE-141212-384 Length:440 Species:Danio rerio


Alignment Length:561 Identity:95/561 - (16%)
Similarity:173/561 - (30%) Gaps:213/561 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 TSCDGPRYCSESCFAQSRRAS--FKKAKTCDWCKHVRHAVSYVDFQDGASQLQFCSEKCLNQYKM 314
            |.|:||...:.:...|.|:.|  |..:........::.|.|:::              |:     
Zfish    19 TDCNGPDCSNSNDKEQIRKTSPQFNSSNEHSMNLALKLATSFLN--------------CV----- 64

  Fly   315 QIFCHETQAHLDMHPHLRDQAMDAGSEAGLITPDLWLRNCRSRSASPASTLSVSPGPPPAPAVSR 379
               ||..:..:....|...:.:.|.:...            ||:.|.::|:|:        .:.:
Zfish    65 ---CHGNKPFVLPVDHKISKDLPAETRPA------------SRTVSDSNTISL--------VLDQ 106

  Fly   380 CPDS--PPSHHPSKPLISVAPVSKLLAQKS------------PGPGPGAPPPPPPPVQRHLAGKL 430
            |.:|  ||:.| |.|..|......||:.:|            .||..|.          ||    
Zfish   107 CLNSQLPPTLH-SYPFDSYQSNENLLSSQSEALDYNTDISVFQGPNIGT----------HL---- 156

  Fly   431 GRRKRRGISSSLGSETVASLLQKQQQQQAPQQHQAPPTLTADFGGSSVPLPPLSPMPSMQEAPQQ 495
                 :.:..||.:...:......|||..|        ||::          :.|..|:|     
Zfish   157 -----QNLVPSLSNYASSDCQMTGQQQSIP--------LTSN----------VLPYQSVQ----- 193

  Fly   496 QQAPQVPPTQALPRGPTAIPASYFATPSNGVPMGHPFAGRPPPPPHHFMHPPPHGMMPRGFGPHF 560
                                      ||| .||                                
Zfish   194 --------------------------PSN-TPM-------------------------------- 199

  Fly   561 GPPLPPQMPELGSLLGAVPPVTVMVPYPIIIPLPIPIPVPLPVIDFYKAHLTPEE--RKRFDEQR 623
                          ...:||.|::||||::..||:|:|:|:|:         |.:  :..:....
Zfish   200 --------------TSLIPPATLLVPYPLVFLLPVPLPIPIPI---------PIQIPQSLYSNTI 241

  Fly   624 AAPTRAENAEEQEQPQPLDCSKSRSELEEEKPDVEKLSEPGQELDNDQEEDEKESIPK-TNPDGD 687
            ..|:|.::.        :|.|...|.......|:.....|....|...:...|.::.| .:|   
Zfish   242 VKPSRTDSM--------IDKSTQISSSISCCTDIMFSQTPSVSQDEVLDLSFKTTLTKHEHP--- 295

  Fly   688 TNAASPSISQESSSSPQQTHCIVRDSTQSEPEADNQKLPKLKITRLQTK-RTLIQTK------EA 745
             .:|||::..:.|        :|..:|:.:....:....:.|.|..::| ..:|::|      ..
Zfish   296 -LSASPNLPLDLS--------VVNTNTKHQDHWHDGMSGRCKRTTHESKGNNIIRSKYEDYNGRT 351

  Fly   746 AAECSRPLRKRKRIIDCDFQKMGLKEPEMANDGEQSNGSSN 786
            .......:..|..|:....::.|.....|.|...:.:.|.|
Zfish   352 VHSAQTVIVSRTEILPFSDKRKGFSRDYMINSATKPDKSQN 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SobpNP_001286320.1 Ribosomal_L24e_L24 275..312 CDD:294589 3/36 (8%)
SOBP 278..587 CDD:291927 48/322 (15%)
si:ch211-161f7.2XP_017213831.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23186
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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