DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13192 and Gnb1l

DIOPT Version :9

Sequence 1:NP_610702.1 Gene:CG13192 / 36259 FlyBaseID:FBgn0033653 Length:323 Species:Drosophila melanogaster
Sequence 2:XP_006248712.1 Gene:Gnb1l / 680266 RGDID:1594165 Length:326 Species:Rattus norvegicus


Alignment Length:343 Identity:99/343 - (28%)
Similarity:158/343 - (46%) Gaps:52/343 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PPDPVFSLRSPDMGAVNSLCF------QESDRLLAGTIKGSVFLWDLQTNR--SALHFEVGSDPI 61
            ||.|.|.||. ...|||:|.|      .|:..|.:|:..|.|.:|.|||.|  :.|:.. |...:
  Rat     8 PPSPRFVLRG-TQSAVNTLHFCPAPGAAENPLLFSGSQNGLVHIWSLQTRRIVATLNGH-GGQGV 70

  Fly    62 TSLHHTP--DRLVTQEKGGTITMFSIGGSSYVKERSIPGNHLGFCRSALHT-----------NTS 113
            |.|...|  .:|::|.:...:.::.:.........|:..:.:|||:|::..           ...
  Rat    71 TWLKTLPQGQQLLSQGRDPRLCLWDLAEGRNTVMDSVQLDSVGFCKSSILVRGQLCWMLAVPGKG 135

  Fly   114 KTNEQLLFYPCEESSIGVLHVTDAAAPTQILVPDDPQLPKLGSVTCFKPFECASQL--FLLAGYE 176
            ....|:|..|.:.|...:....||               |.|...|...::..|.|  .||||||
  Rat   136 SDEVQILEMPSKTSVCTLKPEADA---------------KPGMPMCLGLWQTNSSLRPLLLAGYE 185

  Fly   177 SGHFLTWDISSSVILDVMELAQD-ATSVDYDPVTNRGIVGGPTDKLISFSY-QRSSMQMQLGSEL 239
            .|....||:|...:...:...:: ...:|:|....:|:.|.....|..:|. .:.|:|::...||
  Rat   186 DGSVTLWDVSERKVCSQITCHEEPVMGLDFDSQKAKGVSGSAGKVLAVWSLDDQQSLQVKKTHEL 250

  Fly   240 CIKNPGVNGVRIRPDQKVFASAGWDGRIRIFSWKSLRPLAVLTQHKNGGVMDLAFSSQQVAMWHA 304
            .  |||:..|.:|||.::||:||||.|||:|.|::::|||||..| :..|..:||::.       
  Rat   251 I--NPGIAEVTLRPDHRLFATAGWDHRIRVFHWRTIKPLAVLAFH-SAPVHCVAFAAD------- 305

  Fly   305 PIMAAAGMDGQISLWDLY 322
            .::||...|.:||:|.||
  Rat   306 GLLAAGSKDQRISVWSLY 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13192NP_610702.1 WD40 <5..321 CDD:225201 97/340 (29%)
WD40 repeat 62..98 CDD:293791 6/37 (16%)
WD40 repeat 103..147 CDD:293791 9/54 (17%)
WD40 repeat 200..245 CDD:293791 11/45 (24%)
WD40 201..>321 CDD:295369 43/120 (36%)
WD40 repeat 247..282 CDD:293791 19/34 (56%)
Gnb1lXP_006248712.1 WD40 12..321 CDD:421866 93/335 (28%)
WD40 repeat 24..64 CDD:293791 13/39 (33%)
WD40 repeat 71..109 CDD:293791 6/37 (16%)
WD40 repeat 114..154 CDD:293791 7/39 (18%)
WD40 repeat 163..204 CDD:293791 13/40 (33%)
WD40 repeat 210..246 CDD:293791 8/35 (23%)
WD40 repeat 254..294 CDD:293791 22/40 (55%)
WD40 repeat 299..320 CDD:293791 7/27 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41515
Inparanoid 1 1.050 118 1.000 Inparanoid score I4698
OMA 1 1.010 - - QHG55530
OrthoDB 1 1.010 - - D1543596at2759
OrthoFinder 1 1.000 - - FOG0006340
OrthoInspector 1 1.000 - - oto97252
orthoMCL 1 0.900 - - OOG6_103807
Panther 1 1.100 - - LDO PTHR19854
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4617
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.980

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