DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tret1-2 and INT2

DIOPT Version :9

Sequence 1:NP_610694.1 Gene:Tret1-2 / 36249 FlyBaseID:FBgn0033644 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_174313.1 Gene:INT2 / 839902 AraportID:AT1G30220 Length:580 Species:Arabidopsis thaliana


Alignment Length:548 Identity:159/548 - (29%)
Similarity:253/548 - (46%) Gaps:122/548 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 ALSVSLCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGIT----GGPL 92
            |.|..:..|:.|:.:...|.||:.:.|    .|: :.|..:|:..::...|:||.|.    ||..
plant    32 AFSAGIGGLLFGYDTGVISGALLYIRD----DFK-SVDRNTWLQEMIVSMAVAGAIVGAAIGGWA 91

  Fly    93 IEYLGRRSTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQPEVRG 157
            .:.|||||.||.....|::.::::|.|.|..:::.||...|..||:||::.|:|:.|....::||
plant    92 NDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRG 156

  Fly   158 TLGLLPTALGNIGILVCYVAGSFMNWSM-LAF----------LGAALPVPFL---ILMIIIPETP 208
            .|      :...|.|:  ..|.|:::.: |||          ||.| .:|.|   :||..:||:|
plant   157 AL------VSTNGFLI--TGGQFLSYLINLAFTDVTGTWRWMLGIA-GIPALLQFVLMFTLPESP 212

  Fly   209 RWFVNRGQEERARKALKWLRGKEADVEPE---LKELMQSQADADRQATQNTCLELFKRNNL-KPL 269
            ||...:|:||.|:..|:.:...| |||.|   ||:.::::...:..:.:...::|.|...: :.|
plant   213 RWLYRKGREEEAKAILRRIYSAE-DVEQEIRALKDSVETEILEEGSSEKINMIKLCKAKTVRRGL 276

  Fly   270 SISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLSTIIVGVV----NFFATFMGIILIDRLG 330
            ...:||..||||.|||.|::|:..|.:.||  ..||.:.:::.:|    |.|.:.:.|..|||:|
plant   277 IAGVGLQVFQQFVGINTVMYYSPTIVQLAG--FASNRTALLLSLVTAGLNAFGSIISIYFIDRIG 339

  Fly   331 RKILLYVSDIAMIVTLSILGGFFY-CKAHGPDVSHL----------------------------- 365
            ||.||.:|...:|::|.||.|.|| ...|.|.:|.|                             
plant   340 RKKLLIISLFGVIISLGILTGVFYEAATHAPAISSLETQRFNNISCPDYKSAMNTNAWDCMTCLK 404

  Fly   366 ------------------------------------------------GWLPLTCFVIYILGFSL 382
                                                            ||..|....:||:.||.
plant   405 ASSPSCGYCSSPIGKEHPGACWISDDSVKDLCHNENRLWYTRGCPSNFGWFALLGLGLYIIFFSP 469

  Fly   383 GFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGL 447
            |.|.:||::..||.|.:.||....:....||....:|.::|..||.|:|....|.:||.|.::.|
plant   470 GMGTVPWIVNSEIYPLRFRGICGGIAATANWISNLIVAQSFLSLTEAIGTSWTFLIFGVISVIAL 534

  Fly   448 FFVIIFVPETRGKSLEEIERKMMGRVPM 475
            .||::.||||:|..:|||| ||:.|..|
plant   535 LFVMVCVPETKGMPMEEIE-KMLERRSM 561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-2NP_610694.1 Sugar_tr 31..467 CDD:278511 154/538 (29%)
MFS 33..454 CDD:119392 145/524 (28%)
INT2NP_174313.1 SP 25..552 CDD:273317 152/536 (28%)
MFS 33..541 CDD:119392 145/524 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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