DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tret1-2 and PGLCT

DIOPT Version :9

Sequence 1:NP_610694.1 Gene:Tret1-2 / 36249 FlyBaseID:FBgn0033644 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_568328.1 Gene:PGLCT / 831472 AraportID:AT5G16150 Length:546 Species:Arabidopsis thaliana


Alignment Length:501 Identity:153/501 - (30%)
Similarity:241/501 - (48%) Gaps:57/501 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LMRADTHVSFSVPADGLKANFTFSQ----------------------VLAALSVS-LCSLVVGFV 45
            |.|||..:...:....:||....:|                      ||..:.|: |.:::.|:.
plant    58 LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGKSSGTVLPFVGVACLGAILFGYH 122

  Fly    46 SAYTSPALVSMTDRTITSFEVTKDAG--------SWVGGIMPLAALAGGITGGPLIEYLGRRSTI 102
            ....:.||..:          .||.|        .|:...:...|..|..|||.|.:..||..|.
plant   123 LGVVNGALEYL----------AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRTF 177

  Fly   103 LATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQPEVRGTLGLLPTALG 167
            ...|:|..:.:.|.|.|.:|..::.||.|.|..:||:|..:|:|:.|....|:||.||.:.....
plant   178 QLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFI 242

  Fly   168 NIGILVCYVAGSFMN----WSMLAFLGAALPVPFLIL-MIIIPETPRWFVNRGQEERARKALKWL 227
            .||||...:||..:.    |....|..|.:|...|.: |...||:|||.|.:|:...|.||:|.|
plant   243 CIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAIKTL 307

  Fly   228 RGKEADVEPELKELMQS-QADADRQATQNTCLELFKRNNLKPLSISLGLMFFQQFSGINAVIFYT 291
            .|||..|| .:::|..| |..::.:|   ...:||.....|.:|:...|..|||.:|||||::|:
plant   308 YGKERVVE-LVRDLSASGQGSSEPEA---GWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYS 368

  Fly   292 VQIFKDAGSTIDSNL-STIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIVTLSILGGFFYC 355
            ..:|:.||  |.|:: ::.:||..|.|.|.:...|:|::|||.||..|...|.:::.:|...|..
plant   369 TSVFRSAG--IQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMALSMLLLSLSFTW 431

  Fly   356 KAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVT 420
            ||.   .::.|.|.:...|:|:|.||||.||:|.|::.||..::||..|.::....:|...||:.
plant   432 KAL---AAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIG 493

  Fly   421 KTFQDLTVAMGAHGAFWLFGAICIVGLFFVIIFVPETRGKSLEEIE 466
            ..|..:....|....:..|..:|::.:.::...|.||:|:||||||
plant   494 LYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEEIE 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-2NP_610694.1 Sugar_tr 31..467 CDD:278511 144/452 (32%)
MFS 33..454 CDD:119392 134/436 (31%)
PGLCTNP_568328.1 MFS 109..524 CDD:119392 134/433 (31%)
Sugar_tr 111..539 CDD:278511 142/446 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100060
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X26
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.710

Return to query results.
Submit another query.