DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tret1-2 and INT4

DIOPT Version :9

Sequence 1:NP_610694.1 Gene:Tret1-2 / 36249 FlyBaseID:FBgn0033644 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_001328028.1 Gene:INT4 / 827346 AraportID:AT4G16480 Length:582 Species:Arabidopsis thaliana


Alignment Length:554 Identity:144/554 - (25%)
Similarity:234/554 - (42%) Gaps:120/554 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 ALSVSLCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGI----TGGPL 92
            |||..:..|:.|:.:...|.||:.:.:    .|:.. |..:|:...:...|:||.|    .||.:
plant    31 ALSAGIGGLLFGYDTGVISGALLFIKE----DFDEV-DKKTWLQSTIVSMAVAGAIVGAAVGGWI 90

  Fly    93 IEYLGRRSTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQPEVRG 157
            .:..|||.:||...|.|::.::::|.|....:|:.||...||.||:||::.|:|:.|.....:||
plant    91 NDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYISEASPARIRG 155

  Fly   158 TL----GLLPTALGN-----IGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIIIPETPRWFVN 213
            .|    |||.|. |.     |.:...:..|:: .| ||...|....|.| :||:.:||:|||...
plant   156 ALVSTNGLLITG-GQFFSYLINLAFVHTPGTW-RW-MLGVAGVPAIVQF-VLMLSLPESPRWLYR 216

  Fly   214 RGQEERARKALKWL-RGKEADVEPELKELMQSQADADRQATQNTCLELFKRNNLKP-----LSIS 272
            :.:...:|..|:.: ...|.:.|.|..:|......||.....::.....|.....|     |:..
plant   217 KDRIAESRAILERIYPADEVEAEMEALKLSVEAEKADEAIIGDSFSAKLKGAFGNPVVRRGLAAG 281

  Fly   273 LGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSN---LSTIIVGVVNFFATFMGIILIDRLGRKIL 334
            :.:...|||.|||.|::|:..|.:.||...:..   ||.|..| :|...:.:.::.:||.||:.|
plant   282 ITVQVAQQFVGINTVMYYSPSIVQFAGYASNKTAMALSLITSG-LNALGSIVSMMFVDRYGRRKL 345

  Fly   335 LYVSDIAMIVTLSILGGFF----------------------YCKAHGP----------------- 360
            :.:|...:|..|.||...|                      .|.|:.|                 
plant   346 MIISMFGIIACLIILATVFSQAAIHAPKIDAFESRTFAPNATCSAYAPLAAENAPPSRWNCMKCL 410

  Fly   361 ------------------------DV-----------------SHLGWLPLTCFVIYILGFSLGF 384
                                    |:                 |..|:|.:....:||:.::.|.
plant   411 RSECGFCASGVQPYAPGACVVLSDDMKATCSSRGRTFFKDGCPSKFGFLAIVFLGLYIVVYAPGM 475

  Fly   385 GPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGLFF 449
            |.:||::..||.|.:.||....:....||....:|:::|..||.|:|:.|.|.||.....:||||
plant   476 GTVPWIVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAGFSTIGLFF 540

  Fly   450 VIIFVPETRGKSLEEIERKMMGRVPMSSVVNIKP 483
            :.:.||||:|...||:|:.:        .|..||
plant   541 IWLLVPETKGLQFEEVEKLL--------EVGFKP 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-2NP_610694.1 Sugar_tr 31..467 CDD:278511 140/536 (26%)
MFS 33..454 CDD:119392 132/522 (25%)
INT4NP_001328028.1 MFS_HMIT_like 33..547 CDD:340918 132/523 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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