DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tret1-2 and VGT1

DIOPT Version :9

Sequence 1:NP_610694.1 Gene:Tret1-2 / 36249 FlyBaseID:FBgn0033644 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_186959.2 Gene:VGT1 / 821117 AraportID:AT3G03090 Length:503 Species:Arabidopsis thaliana


Alignment Length:478 Identity:148/478 - (30%)
Similarity:245/478 - (51%) Gaps:54/478 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 VLAA----LSVSLCSLVVGFVSAYTSPALVSMTDRTITS---FEVTK-DAGSWVGGIMPLAALAG 85
            ||||    |..:|.:|:.|:....||.|::|:...|::.   ::::. |.|....|.: ..||.|
plant    44 VLAAIPPFLFPALGALLFGYEIGATSCAIMSLKSPTLSGISWYDLSSVDVGIITSGSL-YGALIG 107

  Fly    86 GITGGPLIEYLGRRSTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGET 150
            .|....:.:.:|||..::..|..::|.:::...|....:::.||...|..:|:...:.|:|:.||
plant   108 SIVAFSVADIIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAET 172

  Fly   151 LQPEVRG---TLGLLPTALGNIG------ILVCYVAGSFMNWSMLAFLGAALPVPFLI--LMIII 204
            ...::||   :|....|.||.:|      :.:..::|    |..:  ....||.|.::  .|..:
plant   173 APSQIRGRMISLKEFSTVLGMVGGYGIGSLWITVISG----WRYM--YATILPFPVIMGTGMCWL 231

  Fly   205 PETPRWFVNR---GQ------EERARKALKWLRGKE-ADVEPE-----LKELMQSQADADRQATQ 254
            |.:|||.:.|   ||      ::.|.::|..|||.. ||...|     |.||  |....|::||.
plant   232 PASPRWLLLRALQGQGNGENLQQAAIRSLCRLRGSVIADSAAEQVNEILAEL--SLVGEDKEATF 294

  Fly   255 NTCLELFKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG--STIDSNLSTIIVGVVNFF 317
            .   |||:...||.|:|:.||:.|||.:|..:|::|...|.:.||  :..|:...:|::|::...
plant   295 G---ELFRGKCLKALTIAGGLVLFQQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLV 356

  Fly   318 ATFMGIILIDRLGRKILLYVSDIAMIVTLSILGGFFYCKAHGPDVSHLGWLPLTCFVIYILGFSL 382
            .|.:.:|:|||:||:.||......|:::|.:||.::....:.|.|:      :...::|:..:.|
plant   357 MTGVSVIVIDRVGRRPLLLCGVSGMVISLFLLGSYYMFYKNVPAVA------VAALLLYVGCYQL 415

  Fly   383 GFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGL 447
            .||||.|||:.||.|.|:||...|:....|:....:||..|..|...:||...|..||.||:|.|
plant   416 SFGPIGWLMISEIFPLKLRGRGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVICVVSL 480

  Fly   448 FFVIIFVPETRGKSLEEIERKMM 470
            ||:...||||:|.:|||||.|.:
plant   481 FFIYYIVPETKGLTLEEIEAKCL 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-2NP_610694.1 Sugar_tr 31..467 CDD:278511 144/471 (31%)
MFS 33..454 CDD:119392 133/452 (29%)
VGT1NP_186959.2 MFS_GLUT10_12_Class3_like 53..498 CDD:340920 139/462 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D430696at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.780

Return to query results.
Submit another query.