DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tret1-2 and R09B5.11

DIOPT Version :9

Sequence 1:NP_610694.1 Gene:Tret1-2 / 36249 FlyBaseID:FBgn0033644 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_503413.2 Gene:R09B5.11 / 178634 WormBaseID:WBGene00019979 Length:516 Species:Caenorhabditis elegans


Alignment Length:500 Identity:140/500 - (28%)
Similarity:233/500 - (46%) Gaps:73/500 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 SVPADGLKANFTFSQVLAALSVSLCSLVVGF-VSAYTSPALVSMTDRTITSFEVTKDAGS----- 72
            |:|.:    |:|........|::|.|...|| :....:|..:.:.......||:..:..|     
 Worm    37 SLPDE----NWTPFLFFCISSIALASFQDGFQIGCINAPGPLIIDWIKKCHFELFGEVLSQYQAD 97

  Fly    73 --W--------VGGIMPLAALAGGITGGPLIEYLGRRSTILATAVPFIVSSLLIACA--VNVI-M 124
              |        |||:.      |....|.|.:..||:||:|...:..:::::.::.:  .|.. |
 Worm    98 FIWSVAVSMFSVGGMF------GSFCSGFLADKFGRKSTLLYNNILALLAAVCLSTSKLFNFYPM 156

  Fly   125 ILCGRFLTGFCVGIASLSLPVYLGETLQPEVRGTLG-----------LLPTALGNIGILVCYVAG 178
            |:.||||.|...||.|..:|::|.|.....:||..|           :|..|||     :..:.|
 Worm   157 IVFGRFLVGLNCGITSGLVPMFLTELAPANLRGKCGSFHQLNISVAIVLSQALG-----LPQIFG 216

  Fly   179 SFMNWSMLAFLGAALPVPFLILMIIIP---ETPRWFVNR-GQEERARKALKWLRGKEADVEPELK 239
            :.:.|   .::.|.:.:|..:.:..||   |:|::.::: ...|.||:.|:.||| ...|:.||:
 Worm   217 TQVGW---PYIFACVAIPTFLQLATIPFCVESPKYLISKLNDREEARRILEKLRG-HTKVDEELE 277

  Fly   240 ELMQSQADADRQATQNTCLELFKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STID 303
            .::|..........|...:.|||.:|..|:.:|:.:||.||||||:||.||:..|||..| |..:
 Worm   278 HMVQETMVTVEPLHQPGYVSLFKGDNQWPMIVSILMMFSQQFSGISAVTFYSTLIFKRNGLSGNE 342

  Fly   304 SNLSTIIVGVVNFFATFMGIILID--RLGRKIL-------LYVSDIAMIVTLSILGGFFYCKAHG 359
            ...:|:..|.:...|||..:.|||  :.|||.|       :.:|.|.:::||::....::.    
 Worm   343 PMYATVGFGCIKLIATFGCLFLIDHPKFGRKRLHIAGLSGMCISSILIVITLTLSNAGYHW---- 403

  Fly   360 PDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQ 424
              .|::..|.:..||:   .|:.|.|||||....|:..:..||.||:|....||...::|..||.
 Worm   404 --ASYMNVLFILSFVV---TFAFGPGPIPWFFTSELFDSATRGRAAAVSATSNWVANWMVGLTFL 463

  Fly   425 DLTVAMGAHGAFWLFGAICIVGLFFVIIFVPETRGKSLEEIERKM 469
            .:...:..: ||.:|.........|...|||||:|||...|.:::
 Worm   464 PINNIIHQY-AFLMFTFFTFTFAIFTWKFVPETKGKSPSAIRKEL 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-2NP_610694.1 Sugar_tr 31..467 CDD:278511 136/479 (28%)
MFS 33..454 CDD:119392 127/464 (27%)
R09B5.11NP_503413.2 Sugar_tr 54..499 CDD:278511 132/469 (28%)
MFS 90..465 CDD:119392 115/398 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100060
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X26
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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