DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tret1-1 and ARN2

DIOPT Version :9

Sequence 1:NP_610693.1 Gene:Tret1-1 / 36248 FlyBaseID:FBgn0050035 Length:857 Species:Drosophila melanogaster
Sequence 2:NP_011816.2 Gene:ARN2 / 856338 SGDID:S000001039 Length:620 Species:Saccharomyces cerevisiae


Alignment Length:547 Identity:103/547 - (18%)
Similarity:202/547 - (36%) Gaps:164/547 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   321 ESDEDFLTSRQHFQQQ-RSISTDSRKSRRLYEMDEMDNKRGENIRHAVPFVRQITEDGKPKLEVY 384
            |.:....|.|::.::. ..:..|.:........|||.:|    ::.....:.:.:|....|.:.:
Yeast     6 EDNRSSQTKRKNTEKNCNELMVDEKMDDDSSPRDEMKDK----LKGTKSLIIRKSELMAKKYDTW 66

  Fly   385 RPTTNPIYIWTQVLAALSVSLGSLVVG-----FVSAYTSPALVSMTDRNITSFEVTQDAGSWVGG 444
            :  ...|::::..:...:..|.|.:.|     .:::|::.:|:|.                 |..
Yeast    67 Q--LKAIFLFSAFICTFAYGLDSSIRGTYMTYAMNSYSAHSLIST-----------------VSV 112

  Fly   445 IMPLAGLAGGIAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAG---FCVGI 506
            |:.:......:..|.|.:..||....|.:.|.:||.:::.:.|.:|.     |:.||   :.||:
Yeast   113 IVLMISAVSQVIFGGLSDIFGRLTLFLVSIVLYIVGTIIQSQAYDVQ-----RYAAGAVFYYVGL 172

  Fly   507 ASLSLPVYLGETVQPEVRGTL--GLLPTAFGNIGILLCFVAGSFM-------NWS----MLAFLG 558
            ..:.|.|.|..:....::..|  .|:|:.   ..|:..:|:||.:       |||    |.||:.
Yeast   173 VGVMLQVVLMLSDNSSLKWRLFYTLIPSW---PSIITTWVSGSVVEAANPLENWSWNIAMWAFIF 234

  Fly   559 AALPVPFLILMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRSQADADRQASRN 623
            ....:|.::.|..:    ||        :.|..::|   ||...|..                  
Yeast   235 PLCCIPLILCMLHM----RW--------KVRNDVEW---KELQDEKS------------------ 266

  Fly   624 TMLELLKLNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNLCTIIVGIVNFLATF 688
                                  :.|..|:..::   ||:|    ..:|      :||::.|.|. 
Yeast   267 ----------------------YYQTHGLVQML---VQLF----WKLD------VVGVLLFTAG- 295

  Fly   689 IGIVLIDRAGRKILLYVSDI------AMVLTLFVLG-----GFFYCKT------YGPD--VSHLG 734
            :|.:|:.      |.....:      :.::..||||     ||.|.::      :.|.  :...|
Yeast   296 VGCILVP------LTLAGGVSTNWRNSKIIGPFVLGFVLVPGFIYWESRLALVPFAPFKLLKDRG 354

  Fly   735 -WLPL--TCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWFCTFV--VTKTFQDL 794
             |.||  ..|:.::...:.|:       :..||...:..||:|.....|.: :||  |...|..|
Yeast   355 VWAPLGIMFFICFVYQMAAGY-------LYTILVVAVDESASSATRIINLY-SFVTAVVAPFLGL 411

  Fly   795 TVAMGAH-GAFWLFGAICF---VGLFF 817
            .|...:. .::.:||...:   :|||:
Yeast   412 IVTRSSRLKSYIIFGGSLYFITMGLFY 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-1NP_610693.1 SP 382..833 CDD:273317 93/485 (19%)
MFS 401..822 CDD:119392 92/466 (20%)
ARN2NP_011816.2 MFS_ARN_like 69..581 CDD:340880 93/478 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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