DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tret1-1 and ATR2

DIOPT Version :9

Sequence 1:NP_610693.1 Gene:Tret1-1 / 36248 FlyBaseID:FBgn0050035 Length:857 Species:Drosophila melanogaster
Sequence 2:NP_014006.1 Gene:ATR2 / 855322 SGDID:S000004892 Length:540 Species:Saccharomyces cerevisiae


Alignment Length:673 Identity:124/673 - (18%)
Similarity:210/673 - (31%) Gaps:254/673 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 FKLDKVLQGSSTDSDEEGEDAEHKRLIHRPKDITKPVIIDLKDLESESDEDFLTSRQHFQQQRSI 339
            ||....:||:.::.||        ::..:.||         |.:.|..||:..|           
Yeast     5 FKKKTSVQGTDSEIDE--------KITVKAKD---------KVVVSTEDEEVTT----------- 41

  Fly   340 STDSRKSRRLYEMDEMDNKRGENIRHAVPFVRQITEDGKPKLEVYRPTTNPIY----------IW 394
            ...|.||                        .|:|.|.        |..:|.|          |.
Yeast    42 IVSSTKS------------------------TQVTNDS--------PWQDPTYFSSFGKELMFIA 74

  Fly   395 TQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAG--SWVGGIMPLAGLAGGIAG 457
            |.:||.|....|.          :.||..|   |:.|.....:|.  :|:....|||..:..:..
Yeast    75 TCMLAQLLNQAGQ----------THALCIM---NVLSKSFNSEANNQAWLMASFPLAAGSFILIS 126

  Fly   458 GPLIEYLGRRNTILATAVPFIVSSLLIACAV---NVAMVLCGRFLAGFCVGIASLSLPVYLGETV 519
            |.|.:..|.:..::...|..||.|::...:.   :.|..:..|...|  ||||.           
Yeast   127 GRLGDIYGLKKMLIVGYVIVIVWSIISGLSKYSNSDAFFITSRAFQG--VGIAF----------- 178

  Fly   520 QPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMF-------LIPETP- 576
                     :||...|.:|.:  :..|||....:::|:||..|...   ||       ::.|.| 
Yeast   179 ---------ILPNIMGLVGHV--YKVGSFRKNIVISFIGACAPTGG---MFGGLFGGLIVTEDPN 229

  Fly   577 RW---FVGRGLEERARKALKWLRGKEADVEPELKGLMRSQADADRQASRNTMLELLKLNNL---- 634
            :|   |...|:.......:.|. ....:|...:.||     ..|...|...::.|:..|.:    
Yeast   230 QWPWVFYAFGIATFLSLLMAWY-SIPNNVPTNIHGL-----SMDWTGSALAIIGLILFNFVWNQA 288

  Fly   635 ------KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVL 693
                  ||..|.|.::         :|||                    :|....:.:.:..:.|
Yeast   289 PIVGWDKPYIIVLLII---------SVIF--------------------LVAFFVYESKYAEVPL 324

  Fly   694 IDRA---GRKILLYVSDIAMVLTLFVLGGFFY------CKTYGP--------------------- 728
            :.||   .|.:::.:..:.:....|.:..|:|      .:.|.|                     
Yeast   325 LPRAMTKNRHMIMILLAVFLGWGSFGIWTFYYVSFQLNLRHYSPVWTGGTYFVFVIFGSMAAFFV 389

  Fly   729 --DVSHLGWLPLTCF-----------------------------VIYILGFSLGFGPIPWLMMGE 762
              .:..||...|.||                             .|...|..|.| |...:::.:
Yeast   390 AFSIKRLGPALLLCFSLMAFDAGSIMFSVLPVEQSYWKLNFAMQAILCFGMDLSF-PASSIILSD 453

  Fly   763 ILPAKIRGSAAS-VATAFNWFCTFV----------VTKTFQDLTVAMGAHGAFWLFGAICFVGLF 816
            .||.:.:|.|.| |.|..|:..:..          :.|:..||  ..|...|.:|...:..:|:.
Yeast   454 GLPMQYQGMAGSLVNTVINYSASLCLGMGGTVEHQINKSGNDL--LKGYRAAVYLGVGLASLGVV 516

  Fly   817 FVIIYVPE--------TQGKTLE 831
            ..:.|:.|        ::.::||
Yeast   517 ISVTYMLENLWNRHRKSEDRSLE 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-1NP_610693.1 SP 382..833 CDD:273317 105/566 (19%)
MFS 401..822 CDD:119392 94/518 (18%)
ATR2NP_014006.1 MFS_Amf1_MDR_like 74..519 CDD:341029 97/522 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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