DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tret1-1 and VBA3

DIOPT Version :9

Sequence 1:NP_610693.1 Gene:Tret1-1 / 36248 FlyBaseID:FBgn0050035 Length:857 Species:Drosophila melanogaster
Sequence 2:NP_009864.1 Gene:VBA3 / 850290 SGDID:S000000574 Length:458 Species:Saccharomyces cerevisiae


Alignment Length:473 Identity:103/473 - (21%)
Similarity:173/473 - (36%) Gaps:132/473 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   446 MPLAGLAGGIAGGPLIEYL---------GRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAG 501
            |.:.|......||..::.|         |.|:.      |.::|  :::||..||.:: |..:.|
Yeast     3 MLIVGRVVASVGGSGLQTLCFVIGCTMVGERSR------PLVIS--ILSCAFAVAAIV-GPIIGG 58

  Fly   502 ---------FC----VGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSF---MN 550
                     :|    :.|..|::.::| .|.:.|.:|.|..:..|.|.|.   .|....|   :|
Yeast    59 AFTTHVTWRWCFYINLPIGGLAIIMFL-LTYKAENKGILQQIKDAIGTIS---SFTFSKFRHQVN 119

  Fly   551 WSMLA--------FLGAALPVPFLILMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELK 607
            :..|.        |.|.||....|:| ||:..|   |.|......:.:.:.:|          :.
Yeast   120 FKRLMNGIIFKFDFFGFALCSAGLVL-FLLGLT---FGGNKYSWNSGQVIAYL----------VL 170

  Fly   608 GLM--------------RSQADADRQASRNTMLELLKLNNLKPLSISLGLMFFQQFSGINAVIFY 658
            |::              :...:.|..:.|..:|..|.   .||..|.:.::.|...:|.|..:.|
Yeast   171 GVLLFIFSLVYDFFLFDKFNPEPDNISYRPLLLRRLV---AKPAIIIINMVTFLLCTGYNGQMIY 232

  Fly   659 TVQIFK--DAGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFF 721
            :||.|:  .|.|.....|..|.:.|.|.:|.....|:..:.|           :|..|.:.||..
Yeast   233 SVQFFQLIFASSAWKAGLHLIPIVITNVIAAIASGVITKKLG-----------LVKPLLIFGGVL 286

  Fly   722 YCKTYGPDVSHLGWLPL---------TCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAAS--- 774
                   .|...|.:.|         ...|:.:.||||||.....||..::...|.|..||.   
Yeast   287 -------GVIGAGLMTLMTNTSTKSTQIGVLLLPGFSLGFALQASLMSAQLQITKDRPEAAMDFI 344

  Fly   775 VATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVII---YVPETQGKTLEDIERK 836
            ..||||.|        .:.|...:|.     :.....|...|...:   ::...:|||::|:   
Yeast   345 EVTAFNTF--------MKSLGTTLGG-----VLSTTVFSASFHNKVSRAHLEPYEGKTVDDM--- 393

  Fly   837 MMGRVRRM----SSVANI 850
            ::.|::..    |::.||
Yeast   394 ILYRLQNYDGSHSTIGNI 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-1NP_610693.1 SP 382..833 CDD:273317 98/450 (22%)
MFS 401..822 CDD:119392 95/439 (22%)
VBA3NP_009864.1 MFS <1..369 CDD:421695 93/426 (22%)
MFS <1..>181 CDD:421695 43/204 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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