DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tret1-1 and MSS1

DIOPT Version :9

Sequence 1:NP_610693.1 Gene:Tret1-1 / 36248 FlyBaseID:FBgn0050035 Length:857 Species:Drosophila melanogaster
Sequence 2:NP_198006.1 Gene:MSS1 / 832703 AraportID:AT5G26340 Length:526 Species:Arabidopsis thaliana


Alignment Length:491 Identity:141/491 - (28%)
Similarity:222/491 - (45%) Gaps:66/491 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   390 PIYIWTQVLAALSVSLGSLVVGFVSAYTSPALVSM--------------------TDRNITSFEV 434
            ||.|.:.::||    .|.|:.|: ....|..:.||                    .|.|...:: 
plant    21 PIVIISCIMAA----TGGLMFGY-DVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKYD- 79

  Fly   435 TQDAGSWVGGIMPLAGLAGGIAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFL 499
            .|....:...:. ||||............||||.|:|...|.||:...|.|.|.::||::.||.|
plant    80 NQGLQLFTSSLY-LAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRIL 143

  Fly   500 AGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMN---------WSMLA 555
            .|..||.|:.::|::|.|.....:||.|.:|......||||.    .:.:|         |....
plant   144 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILF----ANLVNYGTAKIKGGWGWRL 204

  Fly   556 FLGAALPVPFLIL---MFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRSQADAD 617
            .||.| .:|.|:|   ..|:.|||...|.||..:..:..|:.:||.: :||||...|:    :|.
plant   205 SLGLA-GIPALLLTVGALLVTETPNSLVERGRLDEGKAVLRRIRGTD-NVEPEFADLL----EAS 263

  Fly   618 RQAS--RNTMLELLKLNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNL-CTIIV 679
            |.|.  ::....||:..|...|.|::.|..|||.:||||::||...:|...|...|.:| ..::.
plant   264 RLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVT 328

  Fly   680 GIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFFYCKTYGPDVS---HLGWLPLTCF 741
            |.||.|:|.:.|..:|:.||::||..:.:.|..:..|:......|.  .|.|   ..|:..|...
plant   329 GAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVKV--TDTSTNLSKGFAILVVV 391

  Fly   742 VI--YILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAH--- 801
            :|  |:..|:..:||:.||:..|..|.:.|.:..||....|...||::.:.|    ::|..|   
plant   392 MICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAF----LSMLCHFKF 452

  Fly   802 GAFWLFGAICFVGLFFVIIYVPETQGKTLEDIERKM 837
            |.|..|.|...:...||:..:|||:...:|::..::
plant   453 GIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERV 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-1NP_610693.1 SP 382..833 CDD:273317 141/485 (29%)
MFS 401..822 CDD:119392 132/463 (29%)
MSS1NP_198006.1 MFS_STP 29..475 CDD:340919 134/468 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D430696at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100060
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X26
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.720

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