DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tret1-1 and AT5G17010

DIOPT Version :9

Sequence 1:NP_610693.1 Gene:Tret1-1 / 36248 FlyBaseID:FBgn0050035 Length:857 Species:Drosophila melanogaster
Sequence 2:NP_001318578.1 Gene:AT5G17010 / 831564 AraportID:AT5G17010 Length:503 Species:Arabidopsis thaliana


Alignment Length:535 Identity:161/535 - (30%)
Similarity:257/535 - (48%) Gaps:67/535 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   334 QQQRSISTDSRKSRRLYEMDEMDNKRGENIRHAVPFVRQITEDGKPKLEVYRPTTNPIYIWTQVL 398
            :||:.||:.||         |.....||......|.::   |:..|  |.|.       :...:|
plant     6 EQQQPISSVSR---------EFGKSSGEISPEREPLIK---ENHVP--ENYS-------VVAAIL 49

  Fly   399 AALSVSLGSLVVGFVSAYT--------SPALVSMTDRNITSFEV-TQDAGSWVGGIMPLAGLAGG 454
            ..|..:||.|:.|:....|        ||:|..::..|::|.:| ...:||..|      .|.|.
plant    50 PFLFPALGGLLYGYEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYG------ALFGS 108

  Fly   455 IAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGETV 519
            |....:.:.:|||..::..|:.::|.:|:.|.|...::::.||.:.|..||:|..:.|:|:.||.
plant   109 IVAFTIADVIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETA 173

  Fly   520 QPEVRGTLGLLPTAFGNIGILLCFVAGSF-----MNWSMLAFLGAALPVPFLILMFLIPETPRWF 579
            ...:||.|..|...|..:|::..:..||.     ..|..:......|.|...|.|:.:|.:|||.
plant   174 PSPIRGQLVSLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRWL 238

  Fly   580 V-----GRGLEERAR----KALKWLRGKEADVEPELKGLMRSQAD-----ADRQASRNTMLELLK 630
            :     |:|..|..|    |:|..||| .|.|:...:.:....|:     .|::.   |..||.:
plant   239 LLRVIQGKGNVENQREAAIKSLCCLRG-PAFVDSAAEQVNEILAELTFVGEDKEV---TFGELFQ 299

  Fly   631 LNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTI--DGNLCTIIVGIVNFLATFIGIVL 693
            ...||.|.|..||:.|||.:|..:|::|...|.:.||.:.  |....:|::|::..:.|.:.:|:
plant   300 GKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTGVAVVV 364

  Fly   694 IDRAGRKILLYVSDIAMVLTLFVLGGFFYCKTYGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWL 758
            |||.||:.||......||::||:||.::...:..|.|:      :...::|:..:.|.||||.||
plant   365 IDRLGRRPLLLGGVGGMVVSLFLLGSYYLFFSASPVVA------VVALLLYVGCYQLSFGPIGWL 423

  Fly   759 MMGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVP 823
            |:.||.|.|:||...|:|...|:....:||..|..|...:||...|..||.||.:.|.|:...||
plant   424 MISEIFPLKLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFCGFGVICVLSLVFIFFIVP 488

  Fly   824 ETQGKTLEDIERKMM 838
            ||:|.|||:||.|.:
plant   489 ETKGLTLEEIEAKCL 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-1NP_610693.1 SP 382..833 CDD:273317 146/480 (30%)
MFS 401..822 CDD:119392 135/450 (30%)
AT5G17010NP_001318578.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D430696at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X26
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.780

Return to query results.
Submit another query.