DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tret1-1 and PGLCT

DIOPT Version :9

Sequence 1:NP_610693.1 Gene:Tret1-1 / 36248 FlyBaseID:FBgn0050035 Length:857 Species:Drosophila melanogaster
Sequence 2:NP_568328.1 Gene:PGLCT / 831472 AraportID:AT5G16150 Length:546 Species:Arabidopsis thaliana


Alignment Length:511 Identity:154/511 - (30%)
Similarity:239/511 - (46%) Gaps:49/511 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   336 QRSISTDSRKSRRLYEMDEMDNKRGENIRHAVPFVRQITEDGKPKLEVYRPTTNPIYIWTQVLAA 400
            |..:|..|.|:|.:......|....|    |:|    :..:||..              ..||..
plant    66 QSVMSFSSVKARSVRAQASSDGDEEE----AIP----LRSEGKSS--------------GTVLPF 108

  Fly   401 LSVS-LGSLVVGFVSAYTSPALVSMT-DRNITSFEVTQDAGSWVGGIMPLAGLAGGIAGGPLIEY 463
            :.|: ||:::.|:.....:.||..:. |..|....|.|   .|:...:......|...||.|.:.
plant   109 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQ---GWIVSSLLAGATVGSFTGGALADK 170

  Fly   464 LGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLG 528
            .||..|....|:|..:.:.|.|.|.:|..::.||.|||..:||:|..:|:|:.|....|:||.||
plant   171 FGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALG 235

  Fly   529 LLPTAFGNIGILLCFVAGSFMN----WSMLAFLGAALPVPFLIL-MFLIPETPRWFVGRGLEERA 588
            .:...|..||||...:||..:.    |....|..|.:|...|.: |...||:|||.|.:|....|
plant   236 SVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKVSEA 300

  Fly   589 RKALKWLRGKEADVEPELKGLMR-----SQADADRQASRNTMLELLKLNNLKPLSISLGLMFFQQ 648
            .||:|.|.|||..||     |:|     .|..::.:|.   ..:|......|.:|:...|..|||
plant   301 EKAIKTLYGKERVVE-----LVRDLSASGQGSSEPEAG---WFDLFSSRYWKVVSVGAALFLFQQ 357

  Fly   649 FSGINAVIFYTVQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLT 713
            .:|||||::|:..:|:.||...| ...:.:||..|...|.:...|:|:.|||.||..|...|.|:
plant   358 LAGINAVVYYSTSVFRSAGIQSD-VAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMALS 421

  Fly   714 LFVLGGFFYCKTYGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATA 778
            :.:|...|   |:....::.|.|.:...|:|:|.||||.||:|.|::.||..::||..|.:::..
plant   422 MLLLSLSF---TWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLG 483

  Fly   779 FNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIE 834
            .:|...||:...|..:....|....:..|..:|.:.:.::...|.||:|::||:||
plant   484 MHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEEIE 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-1NP_610693.1 SP 382..833 CDD:273317 141/462 (31%)
MFS 401..822 CDD:119392 133/432 (31%)
PGLCTNP_568328.1 MFS 109..524 CDD:119392 133/429 (31%)
Sugar_tr 111..539 CDD:278511 139/442 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100060
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X26
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.710

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