DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tret1-1 and INT4

DIOPT Version :9

Sequence 1:NP_610693.1 Gene:Tret1-1 / 36248 FlyBaseID:FBgn0050035 Length:857 Species:Drosophila melanogaster
Sequence 2:NP_001328028.1 Gene:INT4 / 827346 AraportID:AT4G16480 Length:582 Species:Arabidopsis thaliana


Alignment Length:555 Identity:149/555 - (26%)
Similarity:246/555 - (44%) Gaps:113/555 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   382 EVYRPTTNPIYIWTQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGI- 445
            |.:|.|....||   :..|||..:|.|:.|:.:...|.||:.:.:    .|:.. |..:|:... 
plant    16 ECWRTTWKTPYI---MRLALSAGIGGLLFGYDTGVISGALLFIKE----DFDEV-DKKTWLQSTI 72

  Fly   446 --MPLAG-LAGGIAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIA 507
              |.:|| :.|...||.:.:..|||.:||...|.|::.::::|.|....:::.||...||.||:|
plant    73 VSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMA 137

  Fly   508 SLSLPVYLGETVQPEVRGTL----GLLPTA--FGNIGILLCFV--AGSFMNWSMLAFLGAALPVP 564
            |::.|:|:.|.....:||.|    |||.|.  |.:..|.|.||  .|:: .| ||...|....|.
plant   138 SMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLINLAFVHTPGTW-RW-MLGVAGVPAIVQ 200

  Fly   565 FLILMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRS-QAD-ADRQASRNTMLE 627
            | :||..:||:|||...:.....:|..|:.:...: :||.|::.|..| :|: ||.....::...
plant   201 F-VLMLSLPESPRWLYRKDRIAESRAILERIYPAD-EVEAEMEALKLSVEAEKADEAIIGDSFSA 263

  Fly   628 LLK--LNN---LKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG--STIDGNLCTIIVGIVNFL 685
            .||  ..|   .:.|:..:.:...|||.|||.|::|:..|.:.||  |.......::|...:|.|
plant   264 KLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYSPSIVQFAGYASNKTAMALSLITSGLNAL 328

  Fly   686 ATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFF----------------------YCKTYGP 728
            .:.:.::.:||.||:.|:.:|...::..|.:|...|                      .|..|.|
plant   329 GSIVSMMFVDRYGRRKLMIISMFGIIACLIILATVFSQAAIHAPKIDAFESRTFAPNATCSAYAP 393

  Fly   729 -----------------------------------------DV-----------------SHLGW 735
                                                     |:                 |..|:
plant   394 LAAENAPPSRWNCMKCLRSECGFCASGVQPYAPGACVVLSDDMKATCSSRGRTFFKDGCPSKFGF 458

  Fly   736 LPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGA 800
            |.:....:||:.::.|.|.:||::..||.|.:.||....:|...||....:|:::|..||.|:|:
plant   459 LAIVFLGLYIVVYAPGMGTVPWIVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGS 523

  Fly   801 HGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIER 835
            .|.|.||.....:||||:.:.||||:|...|::|:
plant   524 SGTFLLFAGFSTIGLFFIWLLVPETKGLQFEEVEK 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-1NP_610693.1 SP 382..833 CDD:273317 148/551 (27%)
MFS 401..822 CDD:119392 136/521 (26%)
INT4NP_001328028.1 MFS_HMIT_like 33..547 CDD:340918 136/522 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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