DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tret1-1 and INT3

DIOPT Version :9

Sequence 1:NP_610693.1 Gene:Tret1-1 / 36248 FlyBaseID:FBgn0050035 Length:857 Species:Drosophila melanogaster
Sequence 2:NP_181117.1 Gene:INT3 / 818146 AraportID:AT2G35740 Length:580 Species:Arabidopsis thaliana


Alignment Length:575 Identity:155/575 - (26%)
Similarity:251/575 - (43%) Gaps:139/575 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   382 EVYRPTTNPIYIWTQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSF-EVTQDAGSWVGGI 445
            ||:..|....||   :..|||..:|.|:.|:.:...:.||:.:.:    .| ||  |..:|:..|
plant    15 EVWTTTWETPYI---MRLALSAGIGGLLFGYNTGVIAGALLYIKE----EFGEV--DNKTWLQEI 70

  Fly   446 ---MPLAG-LAGGIAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGI 506
               |.:|| :.|...||...:..|||.::|...|.|::.:|::..|....:::.||.|.||.||:
plant    71 IVSMTVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGM 135

  Fly   507 ASLSLPVYLGETVQPEVRGTL----GLLPTAFGNIGILLCFVAGSFMNWSM-LAF---------- 556
            ||::.|:|:.|.....:||.|    |||.|            .|.|:::.: |||          
plant   136 ASMTSPLYISEMSPARIRGALVSTNGLLIT------------GGQFLSYLINLAFVHTPGTWRWM 188

  Fly   557 LGAALPVPFLI---LMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRS-QAD-A 616
            ||.: .:|.:|   ||..:||:|||......:..:|..|:.:...|. ||.|:..|..| :|: |
plant   189 LGVS-AIPAIIQFCLMLTLPESPRWLYRNDRKAESRDILERIYPAEM-VEAEIAALKESVRAETA 251

  Fly   617 DRQASRNTMLELLK--LNNLKP-----LSISLGLMFFQQFSGINAVIFYTVQIFKDAG--STIDG 672
            |.....:|..:.|:  |:|  |     |:..:.:...|||.|||.|::|:..|.:.||  |....
plant   252 DEDIIGHTFSDKLRGALSN--PVVRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKTA 314

  Fly   673 NLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFF---------------- 721
            ....:|...:|.:.:.:.::.:||.||:.|:.:|...::..|.:|...|                
plant   315 MALALITSGLNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAAVFNEASNHAPKIDKRDSR 379

  Fly   722 -----------------------------------YC----KTYGPDV----------------- 730
                                               :|    :.|.|..                 
plant   380 NFAKNATCPAFAPFTASRSPPSNWNCMKCLQYDCGFCSNGAQEYAPGACIVQSADMKALCHSKGR 444

  Fly   731 --------SHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWFCTFVV 787
                    |..|:|.:....:||:.::.|.|.:||::..||.|.:.||.|..:|...||....||
plant   445 TFFKDGCPSKFGYLAIVFLGLYIIVYAPGMGTVPWIVNSEIYPLRYRGLAGGIAAVSNWMSNLVV 509

  Fly   788 TKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIERKMMGRVR 842
            ::||..||.|:|:.|.|.||.....|||||:.:.||||:|...|::|:.:.|..|
plant   510 SETFLTLTNAVGSSGTFLLFAGSSAVGLFFIWLLVPETKGLQFEEVEKLLEGGFR 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-1NP_610693.1 SP 382..833 CDD:273317 152/564 (27%)
MFS 401..822 CDD:119392 140/534 (26%)
INT3NP_181117.1 SP 1..555 CDD:273317 152/564 (27%)
MFS 31..>364 CDD:119392 101/354 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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