DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tret1-1 and Slc2a4

DIOPT Version :9

Sequence 1:NP_610693.1 Gene:Tret1-1 / 36248 FlyBaseID:FBgn0050035 Length:857 Species:Drosophila melanogaster
Sequence 2:NP_036883.1 Gene:Slc2a4 / 25139 RGDID:2711 Length:509 Species:Rattus norvegicus


Alignment Length:530 Identity:166/530 - (31%)
Similarity:247/530 - (46%) Gaps:94/530 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   374 TEDGKPKLEVYRPTTNPIYIWTQVLAALSVSLGSLVVGF-VSAYTSPALVSMTDRNITSFEVTQD 437
            :|||:|..:  |.|      .|.|||..|..||||..|: :....:|..|.....|.|       
  Rat    10 SEDGEPPQQ--RVT------GTLVLAVFSAVLGSLQFGYNIGVINAPQKVIEQSYNAT------- 59

  Fly   438 AGSWVG-----------------------GIMPLAGLAGGIAGGPLIEYLGRRNTILATAVPFIV 479
               |:|                       .|..:.|:......|.:.::|||:..:||..|..::
  Rat    60 ---WLGRQGPGGPDSIPQGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLANNVLAVL 121

  Fly   480 SSLLIA---CAVNVAMVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILL 541
            ...|:.   .|.:..:::.||||.|...|:.|..:|:|:||.....:||.||.|......||||:
  Rat   122 GGALMGLANAAASYEILILGRFLIGAYSGLTSGLVPMYVGEIAPTHLRGALGTLNQLAIVIGILV 186

  Fly   542 CFVAG--SFMN----WSMLAFLGAALPVPFLILMFLI---PETPRW-FVGRGLEERARKALKWLR 596
            ..|.|  |.:.    |.:|.   |...:|.|:.:.|:   ||:||: ::.|.||..|||:||.|.
  Rat   187 AQVLGLESMLGTATLWPLLL---AITVLPALLQLLLLPFCPESPRYLYIIRNLEGPARKSLKRLT 248

  Fly   597 GKEADVEPELKGLMRSQADADRQASRNTMLELLKL----NNLKPLSISLGLMFFQQFSGINAVIF 657
            | .|||...|..|    .|..|:..|...|.||:|    .:.:||.|::.|...||.||||||.:
  Rat   249 G-WADVSDALAEL----KDEKRKLERERPLSLLQLLGSRTHRQPLIIAVVLQLSQQLSGINAVFY 308

  Fly   658 YTVQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVS-------DIAMVLTLF 715
            |:..||:.|| .......||..|:||.:.|.:.::|::||||:.|..:.       .|.|.:.|.
  Rat   309 YSTSIFELAG-VEQPAYATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALL 372

  Fly   716 VLGGFFYCKTYGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFN 780
            :|...       |.:|::..:.:..||.:   |.:|.|||||.::.|:.....|.:|.:||...|
  Rat   373 LLERV-------PSMSYVSIVAIFGFVAF---FEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSN 427

  Fly   781 WFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLF-FVIIYVPETQGKTLEDIERKMMGRVRRM 844
            |.|.|:|...||.:..|||.: .|.|| |:..:|.| |..:.||||:|:|.:.|.    ...||.
  Rat   428 WTCNFIVGMGFQYVADAMGPY-VFLLF-AVLLLGFFIFTFLRVPETRGRTFDQIS----ATFRRT 486

  Fly   845 SSV--ANIKP 852
            .|:  ..:||
  Rat   487 PSLLEQEVKP 496

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Tret1-1NP_610693.1 SP 382..833 CDD:273317 156/499 (31%)
MFS 401..822 CDD:119392 144/469 (31%)
Slc2a4NP_036883.1 Interaction with SRFBP1. /evidence=ECO:0000250|UniProtKB:P14672 7..13 1/2 (50%)
Sugar_tr 27..483 CDD:278511 152/490 (31%)
MFS 78..447 CDD:119392 124/387 (32%)
Monosaccharide binding. /evidence=ECO:0000250|UniProtKB:P11166 298..304 4/5 (80%)