DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tret1-1 and hmit-1.3

DIOPT Version :9

Sequence 1:NP_610693.1 Gene:Tret1-1 / 36248 FlyBaseID:FBgn0050035 Length:857 Species:Drosophila melanogaster
Sequence 2:NP_497725.2 Gene:hmit-1.3 / 175458 WormBaseID:WBGene00010811 Length:604 Species:Caenorhabditis elegans


Alignment Length:589 Identity:157/589 - (26%)
Similarity:254/589 - (43%) Gaps:158/589 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   385 RPTTNPIYIWTQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPL- 448
            ||:::|...|...:.|.|..:|..:.|:.:...|.|::.:.:               ..||.|| 
 Worm    17 RPSSDPKTGWFVYMLAFSAVIGGFLFGYDTGIVSAAMLYVPN---------------ASGIKPLD 66

  Fly   449 -----------AGLA--GGIAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLA 500
                       .|:|  |.:..||..::|||:..|:..:|.|.:.:::.|.|....::|.||.|.
 Worm    67 SVWQEIIVSITPGVAAIGSLCSGPGSDFLGRKKIIIGASVTFTIGAIICAAAWTKIILLIGRILL 131

  Fly   501 GFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFG---NIGILLC-FVAGSF-------MNWSML 554
            |..:|.||:.:|:|:.|.....:||.   |.|.|.   .:|:::. .:.|:|       :.|.::
 Worm   132 GLAIGFASMIVPIYVSEASPSHIRGK---LVTGFQLMITVGLVIANIIGGAFSYVDPDQVGWRLM 193

  Fly   555 AFLGAALP--VPFLILMFLIPETPRWFVGRGLEERARKAL--------KWLRGKEADV----EPE 605
             |..||:|  :.|:..:|| ||:|||....|....||:.|        :|:..:..::    |.|
 Worm   194 -FAFAAVPAIIQFVCFLFL-PESPRWLYEHGRTVEAREVLTRIYNGHTEWVDYEINEISFSYEEE 256

  Fly   606 LKGLMRSQADADRQASRNTMLELLKLNNL-KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGST 669
            |:      |.|:...:..|::.:||..:: |.:.|...|..|||.||||.|::||..|.:.||  
 Worm   257 LR------AKAEHAGNGPTIIRILKTPHVRKAMIIGSLLQMFQQLSGINTVMYYTGNIIRSAG-- 313

  Fly   670 IDGNLCTIIVGI----VNFLATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFF--------- 721
            :..|..||.:.:    :|||.|||.|.|::|.||::||.||.|.::|.|..:|..|         
 Worm   314 VKDNHTTIWISVGTSAINFLGTFIPIALVERVGRRVLLLVSMIGVILFLIAMGVSFLLINNDSLR 378

  Fly   722 ------YCKTYGPDVSHLG---------------------------------------------- 734
                  |...|.|.|.|..                                              
 Worm   379 TFDQQNYTLNYNPSVKHAAKCLKYSNCDFCVTDENCGFCESKVAKKGYCLPFPSDDSSDYSATGI 443

  Fly   735 --------------W-----------LPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAAS 774
                          |           ||:...|.|:|.||.|:.|:||::..|..|...|.:|.|
 Worm   444 CEFSNLTNNGTDFEWEDTYCHTKFTVLPIIIMVFYLLSFSAGYAPLPWVLNAEFYPLWARSTAVS 508

  Fly   775 VATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIERKMMG 839
            |:||.||....:|:.||..|:.|...:|.|:::.....|.|.||..:||||:|.:::::|...|.
 Worm   509 VSTACNWIFNLIVSLTFLSLSQAATKYGTFFIYCGCTMVALVFVFFFVPETKGYSIDEVEMLFMT 573

  Fly   840 RVRR 843
            :..|
 Worm   574 KEER 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-1NP_610693.1 SP 382..833 CDD:273317 154/577 (27%)
MFS 401..822 CDD:119392 144/550 (26%)
hmit-1.3NP_497725.2 MFS 34..558 CDD:421695 145/551 (26%)
MFS <190..>249 CDD:421695 18/60 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158100
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 237 1.000 Inparanoid score I2130
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2166
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

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