DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Roc2 and RBX1

DIOPT Version :10

Sequence 1:NP_610691.1 Gene:Roc2 / 36246 FlyBaseID:FBgn0044020 Length:113 Species:Drosophila melanogaster
Sequence 2:NP_001154725.1 Gene:RBX1 / 832179 AraportID:AT5G20570 Length:142 Species:Arabidopsis thaliana


Alignment Length:119 Identity:44/119 - (36%)
Similarity:59/119 - (49%) Gaps:26/119 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 AGKPEKMFTLKKWNAVAMWSWDVECDICAICRVQVMDSCLRCQADNKRDVMGRQDCVVVW----- 77
            :.|..|.|.:|||:|||:|:||:..|.|||||..:||.|:.|||:.....  .::|.|.|     
plant    25 SNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASAT--SEECTVAWEDDQN 87

  Fly    78 -------------------GECNHSFHHCCMSLWVKQNNRCPLCQQEWSIQRMG 112
                               |.|||:||..|:|.|:|....|||...||..|:.|
plant    88 NCNKYFCILDCSMKDDHLEGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Roc2NP_610691.1 RING-H2_RBX2 42..106 CDD:438129 28/87 (32%)
RBX1NP_001154725.1 mRING-H2-C3H2C2D_RBX1 50..135 CDD:438148 28/86 (33%)

Return to query results.
Submit another query.