DRSC/TRiP Functional Genomics Resources

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Protein Alignment Roc2 and rbx1

DIOPT Version :9

Sequence 1:NP_001163119.1 Gene:Roc2 / 36246 FlyBaseID:FBgn0044020 Length:113 Species:Drosophila melanogaster
Sequence 2:NP_001077013.1 Gene:rbx1 / 449846 ZFINID:ZDB-GENE-041008-106 Length:108 Species:Danio rerio


Alignment Length:104 Identity:48/104 - (46%)
Similarity:66/104 - (63%) Gaps:3/104 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VDRPTDDGDAGKPEKMFTLKKWNAVAMWSWDVECDICAICRVQVMDSCLRCQADNKRDVMGRQDC 73
            ||.|: ..::|..:|.|.:|||||||:|:||:..|.|||||..:||.|:.|||:.....  .::|
Zfish     7 VDTPS-GANSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASAT--SEEC 68

  Fly    74 VVVWGECNHSFHHCCMSLWVKQNNRCPLCQQEWSIQRMG 112
            .|.||.|||:||..|:|.|:|....|||..:||..|:.|
Zfish    69 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Roc2NP_001163119.1 RING 23..112 CDD:302633 43/88 (49%)
zf-rbx1 25..103 CDD:289448 39/77 (51%)
rbx1NP_001077013.1 mRING-H2-C3H2C2D_RBX1 40..101 CDD:319399 28/62 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54028
OrthoDB 1 1.010 - - D1587140at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1071
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.860

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