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Protein Alignment Roc2 and lmgB
DIOPT Version :9
| Sequence 1: | NP_001163119.1 |
Gene: | Roc2 / 36246 |
FlyBaseID: | FBgn0044020 |
Length: | 113 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_001097124.1 |
Gene: | lmgB / 44128 |
FlyBaseID: | FBgn0085470 |
Length: | 365 |
Species: | Drosophila melanogaster |
| Alignment Length: | 26 |
Identity: | 6/26 - (23%) |
| Similarity: | 12/26 - (46%) |
Gaps: | 7/26 - (26%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 1 MADDPEN-------SVDRPTDDGDAG 19
::.|.|: ::.:.||...||
Fly 188 LSSDEEDDGSYAPVALPKMTDTAGAG 213
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| Roc2 | NP_001163119.1 |
RING |
23..112 |
CDD:302633 |
|
| zf-rbx1 |
25..103 |
CDD:289448 |
|
| lmgB | NP_001097124.1 |
None |
|
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
| Tool |
Simple Score |
Weighted Score |
Original Tool Information |
| BLAST Result |
Score |
Score Type |
Cluster ID |
| Compara |
0 | 0.000 |
Not matched by this tool. |
| Domainoid |
0 | 0.000 |
Not matched by this tool. |
| eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG5194 |
| Homologene |
0 | 0.000 |
Not matched by this tool. |
| Inparanoid |
0 | 0.000 |
Not matched by this tool. |
| Isobase |
0 | 0.000 |
Not matched by this tool. |
| OMA |
0 | 0.000 |
Not matched by this tool. |
| OrthoDB |
0 | 0.000 |
Not matched by this tool. |
| OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
| OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
| orthoMCL |
0 | 0.000 |
Not matched by this tool. |
| Panther |
0 | 0.000 |
Not matched by this tool. |
| Phylome |
0 | 0.000 |
Not matched by this tool. |
| RoundUp |
0 | 0.000 |
Not matched by this tool. |
| SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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