DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG9003 and AT5G52480

DIOPT Version :9

Sequence 1:	NP_001097271.1	Gene:	CG9003 / 36244	FlyBaseID:	FBgn0033639	Length:	651	Species:	Drosophila melanogaster
Sequence 2:	NP_200061.3	Gene:	AT5G52480 / 835324	AraportID:	AT5G52480	Length:	241	Species:	Arabidopsis thaliana

Alignment Length:	243	Identity:	50/243 - (20%)
Similarity:	86/243 - (35%)	Gaps:	58/243 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly   249 LRVFSYLDVVSLCRCAQVCKYWNVLALDGSSWQKINLFDFQRDIEGPVIENISQRCRGFLKSLSL 313
            :|:.||...|.:.....:|:  |.:........:||:.||..|   .::..|::|... |:||.|
plant     1 MRILSYNKPVLVNNPEAICR--NAVDRSEGGLLEINIGDFGSD---SLLTYIAERSSN-LRSLRL 59

  Fly   314 RGCQSVGDQSVRTLANHCHNIEHLDLSDCKKITDISTQSISRYCSKLTAINLHSCSNITDNSLKY 378
            . |..:.|............:|.|::|..                           :::..|:|.
plant    60 M-CSEITDDGFVQAVVKLPMLEELEVSGI---------------------------SLSGESMKL 96

  Fly   379 LSDGCPNLMEINVSWCHLIS----ENGVEALARGCVKLRKFSSKGCKQINDNAIMCLAKYCPDLM 439
            ....||||..:.::....:|    ::...|:|....|||.....|.| :....:..:...||.|.
plant    97 AGLSCPNLKTLMLNRLFYLSSDDDDHDAIAIAESMPKLRHLQLCGNK-LTKTGLNAILDGCPHLE 160

  Fly   440 VLNLHSCETITDSSIRQLAANCHKLQKLCVSKCADLTDLTLLSLSQHN 487
            .|:|..|..:..:           |:|.|..|..|        |.:||
plant   161 HLDLRQCINLVGN-----------LEKRCFEKIKD--------LRRHN 189

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG9003	NP_001097271.1	F-box-like	240..285	CDD:289689	7/35 (20%)
		leucine-rich repeat	280..307	CDD:275381	7/26 (27%)
		AMN1	<308..453	CDD:187754	29/148 (20%)
		leucine-rich repeat	308..327	CDD:275381	6/18 (33%)
		leucine-rich repeat	334..359	CDD:275381	3/24 (13%)
		leucine-rich repeat	360..385	CDD:275381	3/24 (13%)
		leucine-rich repeat	386..411	CDD:275381	4/28 (14%)
		AMN1	<409..586	CDD:187754	19/79 (24%)
		leucine-rich repeat	412..437	CDD:275381	5/24 (21%)
		leucine-rich repeat	438..463	CDD:275381	4/24 (17%)
		leucine-rich repeat	464..515	CDD:275381	8/24 (33%)
		leucine-rich repeat	516..541	CDD:275381
		leucine-rich repeat	542..561	CDD:275381
		leucine-rich repeat	571..595	CDD:275381
		leucine-rich repeat	596..621	CDD:275381
AT5G52480	NP_200061.3	AMN1	<40..167	CDD:187754	31/159 (19%)
		leucine-rich repeat	54..78	CDD:275381	6/24 (25%)
		leucine-rich repeat	79..103	CDD:275381	6/50 (12%)
		leucine-rich repeat	134..158	CDD:275381	5/24 (21%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910