DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9003 and SLOMO

DIOPT Version :10

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_567916.2 Gene:SLOMO / 829457 AraportID:AT4G33210 Length:990 Species:Arabidopsis thaliana


Alignment Length:762 Identity:153/762 - (20%)
Similarity:268/762 - (35%) Gaps:265/762 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 AVSSATDRSNNNGNNHNPSLQLNGNGGSNTRQHSSGSNSR-------------QHSSSS------ 123
            ::::|.|.||.:|:..|                 .|.|.|             :.|.::      
plant    28 SLATAMDNSNGDGDFVN-----------------FGENERAPRVPRWRLRLCAEESEAAWAELDR 75

  Fly   124 ------------SNSNSSNISPPPSSSSSSRSNNNNNNHSSNIISGFCSTIWRSATFGSATPVIN 176
                        ...:|||:.......:...:::::.:..:.:.||....  ||.: |.::...|
plant    76 FWTSEIPLNQLVQGESSSNVVAEAEDCTMEEADHDSYHKRAKVYSGLAEC--RSVS-GVSSDAGN 137

  Fly   177 PLPAVSINPKIMESSSDSCSLSSSTTPDVGLADQ----QRNMAGSAQDQSEDQSQTFLGATELDD 237
            .:.:|        ..:.|..::||:..|..:..|    ..|.....:|..:|.     |:::.:|
plant   138 SVSSV--------ERTVSFGIASSSRTDTDMFCQNFILNYNRKDGKKDDGDDN-----GSSDTED 189

  Fly   238 -ELIKQLPKEVLLRVFSYLDVVSLCRCAQVCKYWNVLALDGSSWQKINLFDFQRDIE-------- 293
             |:...|..::|..|||:|:.|.|||.|.||:.|.|.:.....|:.:|..:.:..:|        
plant   190 FEVHIDLTDDLLHMVFSFLNHVDLCRSAMVCRQWRVASAHEDFWRVLNFENIRISMEQFENMCSR 254

  Fly   294 -----------GPVIENISQRCRGFLKSLSLRGCQSVG----DQSVRTLANHCHNIEHLDLSDC- 342
                       .|.:..::.:....|::|.:   .::|    .:|.......|:.:..:.:||. 
plant   255 YPNATEVNVYGAPAVNALAMKAATTLRNLEV---LTIGKGHISESFFQALGECNMLRSVTVSDAI 316

  Fly   343 -----------------KKITDISTQSISRYCSKLTAINLH--------------------SCSN 370
                             .|||......:|..|.:|.:::|.                    ||..
plant   317 LGNGAQEIHLSHDRLRELKITKCRVMRLSIRCPQLRSLSLKRSNMSQAMLNCPLLQLLDIASCHK 381

  Fly   371 ITDNSLKYLSDGCPNLMEINVSWCHLISENGVEALARGCVKLRKFSSKGCKQINDNAIMCLAKYC 435
            :.|.:::..:..||.|..::||.|..:|:..:..:|:.|..|...::..|..|:..::     :.
plant   382 LLDAAIRSAAISCPQLESLDVSNCSCVSDETLREIAQACANLHILNASYCPNISLESV-----HL 441

  Fly   436 PDLMVLNLHSCETITDSSIRQLA----------ANCH----------KLQKLCVSKCADLTDLTL 480
            |.|.||.|||||.||.:|:..:|          .||:          :||.:.:..|...|||.|
plant   442 PMLTVLKLHSCEGITSASMTWIANSPALEVLELDNCNLLTTVSLHLSRLQSISLVHCRKFTDLNL 506

  Fly   481 LSLSQHNHLLNTLEVSGC---RNFTDIGFQALGR--------------NCKYLERMDLEECSQIT 528
            .|:     :|:::.||.|   |..| |...||.|              .|..|:.:||.:|..::
plant   507 QSI-----MLSSITVSNCPALRRIT-ITSNALRRLALQKQENLTTLVLQCHSLQEVDLSDCESLS 565

  Fly   529 DLTLAHLAT--GCPSLEKLTLSHCELITD----------------------------------DG 557
            :......:.  |||.|:.|.|.:||.:|.                                  ||
plant   566 NSVCKIFSDDGGCPMLKSLILDNCESLTAVRFCNSSLASLSLVGCRAVTSLELKCPRIEQICLDG 630

  Fly   558 IRHLTT-------------GSCAAEILSVLELD--------------------NCPLIT------ 583
            ..||.|             |.|..  ||||.::                    .|||:|      
plant   631 CDHLETAFFQPVALRSLNLGICPK--LSVLNIEAPYMVSLELKGCGVLSEASIMCPLLTSLDASF 693

  Fly   584 ------DRTLEHLVSCHNLQRIELFDCQLITRTAIRKLKNHLPNIKV 624
                  |.......||..::.:.|..|..|....:..| |.|||:.|
plant   694 CSQLRDDCLSATTASCPLIESLVLMSCPSIGSDGLSSL-NGLPNLTV 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box_FBXL2-like 237..281 CDD:438887 17/44 (39%)
leucine-rich repeat 280..307 CDD:275381 4/45 (9%)
AMN1 <308..453 CDD:187754 40/186 (22%)
leucine-rich repeat 308..327 CDD:275381 4/22 (18%)
leucine-rich repeat 334..359 CDD:275381 7/42 (17%)
leucine-rich repeat 360..385 CDD:275381 6/44 (14%)
leucine-rich repeat 386..411 CDD:275381 7/24 (29%)
AMN1 <409..586 CDD:187754 67/294 (23%)
leucine-rich repeat 412..437 CDD:275381 3/24 (13%)
leucine-rich repeat 438..463 CDD:275381 14/44 (32%)
leucine-rich repeat 464..515 CDD:275381 19/67 (28%)
leucine-rich repeat 516..541 CDD:275381 6/26 (23%)
leucine-rich repeat 542..561 CDD:275381 8/52 (15%)
leucine-rich repeat 571..595 CDD:275381 11/55 (20%)
leucine-rich repeat 596..621 CDD:275381 6/24 (25%)
SLOMONP_567916.2 F-box_FBXO41 198..237 CDD:438881 15/38 (39%)
leucine-rich repeat 208..257 CDD:275381 13/48 (27%)
leucine-rich repeat 258..282 CDD:275381 2/23 (9%)
leucine-rich repeat 283..306 CDD:275381 4/25 (16%)
leucine-rich repeat 307..326 CDD:275381 2/18 (11%)
leucine-rich repeat 331..350 CDD:275381 5/18 (28%)
AMN1 344..523 CDD:187754 46/188 (24%)
leucine-rich repeat 371..396 CDD:275381 4/24 (17%)
leucine-rich repeat 397..422 CDD:275381 7/24 (29%)
leucine-rich repeat 423..443 CDD:275381 3/24 (13%)
leucine-rich repeat 444..468 CDD:275381 12/23 (52%)
leucine-rich repeat 469..489 CDD:275381 2/19 (11%)
leucine-rich repeat 490..521 CDD:275381 12/35 (34%)
AMN1 <516..660 CDD:187754 34/146 (23%)
leucine-rich repeat 522..552 CDD:275381 7/30 (23%)
leucine-rich repeat 602..622 CDD:275381 0/19 (0%)
leucine-rich repeat 623..643 CDD:275381 5/19 (26%)
leucine-rich repeat 644..664 CDD:275381 6/21 (29%)
LRR <683..>820 CDD:443914 16/58 (28%)
leucine-rich repeat 686..711 CDD:275381 4/24 (17%)
leucine-rich repeat 712..731 CDD:275381 3/18 (17%)
leucine-rich repeat 737..759 CDD:275381 1/3 (33%)
leucine-rich repeat 760..787 CDD:275381
leucine-rich repeat 788..812 CDD:275381
leucine-rich repeat 906..951 CDD:275381
leucine-rich repeat 952..977 CDD:275381
Blue background indicates that the domain is not in the aligned region.

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