DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9003 and AT4G02740

DIOPT Version :10

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_001329758.1 Gene:AT4G02740 / 828188 AraportID:AT4G02740 Length:516 Species:Arabidopsis thaliana


Alignment Length:525 Identity:122/525 - (23%)
Similarity:210/525 - (40%) Gaps:97/525 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 NHNPSLQLNGNGGSNTRQHSSGSNSRQHSSSSSNSNSSNISPPPSSSSSSRS-NNNNNNHSSNII 155
            |...||.|  .||:..:||     ||:...........::.||..|.:|.|: ..:|::|:..||
plant     6 NEPGSLDL--GGGAIYKQH-----SRKRLRRRIQRWVGSMDPPTQSHNSVRTVPGSNHSHTDLII 63

  Fly   156 SGFCSTIWRSATFGSATPVINPLPAVSIN---PKIMESSSDSCSLSSSTTPDVGLADQQRNMAGS 217
            |.|.|       |..::|       :||:   .::::.:..|.|...|...  .|.|:...:|..
plant    64 SSFLS-------FPDSSP-------ISISNSFDRVLDRALASASADESVQD--RLVDRTLELASL 112

  Fly   218 AQDQSEDQSQTFLGATELDDELIKQLPKEVLLRVFSYLDVVSLCRCAQVCKYWNVLALDGSSWQK 282
            ..|.:.   :.|.....:.:.....||.|:.::|||.||..|:.:.|..|..:|..|:|...:..
plant   113 LLDSTR---RCFRKRASVHNSNSWSLPPELTIKVFSMLDTKSMMQAAVCCTMFNKCAMDRLCYSH 174

  Fly   283 INLFDFQRDIEGPVIENISQRCRGFLKSLSL-RGCQSVG-DQSVRTLANHC-----HNIEHLDLS 340
            |:|....|..:..|:..:..|....|:||.| |..::.| |.:...|:..|     :|...|.  
plant   175 IDLTTSARYADKGVVSTMINRAGKELRSLKLGRVVRTAGSDSAAPLLSGSCLSPLAYNHGFLG-- 237

  Fly   341 DCKKITDISTQSISRYCSKLTAINLHSCSNITDNSLKYLSDGCPNLMEINVSWCHLISENGVEAL 405
                             |:|.::.|::...|...||......|||:.::.:...:.::|....:|
plant   238 -----------------SRLRSLRLYNLRPIKYRSLCDALSVCPNITDLRIVGLYNLTEELFNSL 285

  Fly   406 ARGCVKL-----------RKFSSKGCKQINDNAIMCLAKYCPDLMVLNLHSCETITDSSIRQLAA 459
            .:.|..:           |...||.     .::::.....||:|..|.|... .:||...|.||.
plant   286 TKKCRLIEHLFLETYGYPRTLESKA-----GSSLVEFVTNCPNLTSLTLIRF-GLTDDWARNLAE 344

  Fly   460 NCHKLQKLCVSKCADLTD--LTLLSLSQHNHLLNTLEVSGC-----RNFTDIGFQALGRNCKYLE 517
            :|.||:.|.:|:...:..  |..|.||...:||.||.:..|     :...:.....|..|.|.:.
plant   345 SCRKLKYLNLSRSPTIKGRFLRELGLSCKENLLKTLILRSCPKLQEKEVLEFCNSLLTGNFKSIR 409

  Fly   518 RMDLEECSQITDLTLAHLATGC--PS--LEKLTLSHCELI-------TDDGIRHLTTGSCAAEIL 571
            ::|:   |..:.|..:.....|  |:  ||:|.....::.       |..|.|:   |.|..|.|
plant   410 QIDV---SSNSGLASSDRGKRCNKPNFPLERLKEERSDVTFVADFPSTSSGKRY---GVCDEEEL 468

  Fly   572 SVLEL 576
            .::|:
plant   469 RLIEM 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box_FBXL2-like 237..281 CDD:438887 14/43 (33%)
leucine-rich repeat 280..307 CDD:275381 5/26 (19%)
AMN1 <308..453 CDD:187754 33/162 (20%)
leucine-rich repeat 308..327 CDD:275381 7/20 (35%)
leucine-rich repeat 334..359 CDD:275381 1/24 (4%)
leucine-rich repeat 360..385 CDD:275381 6/24 (25%)
leucine-rich repeat 386..411 CDD:275381 3/24 (13%)
AMN1 <409..586 CDD:187754 47/197 (24%)
leucine-rich repeat 412..437 CDD:275381 4/35 (11%)
leucine-rich repeat 438..463 CDD:275381 9/24 (38%)
leucine-rich repeat 464..515 CDD:275381 14/57 (25%)
leucine-rich repeat 516..541 CDD:275381 4/26 (15%)
leucine-rich repeat 542..561 CDD:275381 6/25 (24%)
leucine-rich repeat 571..595 CDD:275381 2/6 (33%)
leucine-rich repeat 596..621 CDD:275381
AT4G02740NP_001329758.1 F-box_SF 135..175 CDD:459239 14/39 (36%)
leucine-rich repeat 174..199 CDD:275381 5/24 (21%)
leucine-rich repeat 200..239 CDD:275381 11/57 (19%)
AMN1 236..>388 CDD:187754 40/176 (23%)
leucine-rich repeat 240..265 CDD:275381 6/24 (25%)
leucine-rich repeat 266..291 CDD:275381 3/24 (13%)
leucine-rich repeat 292..323 CDD:275381 4/35 (11%)
leucine-rich repeat 324..348 CDD:275381 9/24 (38%)
leucine-rich repeat 349..374 CDD:275381 7/24 (29%)
Blue background indicates that the domain is not in the aligned region.

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