DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9003 and VFB3

DIOPT Version :10

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_567316.1 Gene:VFB3 / 826171 AraportID:AT4G07400 Length:554 Species:Arabidopsis thaliana


Alignment Length:492 Identity:114/492 - (23%)
Similarity:184/492 - (37%) Gaps:106/492 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 DQQRNMAGSAQDQSEDQSQTFL------------GATELDDELIKQLPKEVLLRVFSYLDVVSLC 261
            :..|...|.:..:......||.            ||.|..| .|..||.|.|..:|..|....|.
plant    32 EPHRRRMGQSTSKFRRSKTTFTSPVLPNLREQNSGADEPYD-YISNLPDECLSLIFQSLTCADLK 95

  Fly   262 RCAQVCKYWNVLALDGSSWQKINLFDFQRDIEGPVIENISQRCRGFLKSLSLRGCQSVG--DQSV 324
            ||:.||:.|  |.::|....:::| ..|.|:.. ||.::..|.....|.:.....:|:|  |.:.
plant    96 RCSLVCRRW--LTIEGQCRHRLSL-KAQSDLIS-VIPSLFTRFDSVTKLVLRSDRRSLGICDNAF 156

  Fly   325 RTLANHCHNIEHLDLSDCKKITDISTQSISRYCSKLTAINLHSCSNITDNSLKYLSDGCPNLMEI 389
            ..::..|.|:..|.|..|.:|:|:.....:..|..|..::..|| ......:..|.:.|..|.|:
plant   157 VMISVRCRNLTRLKLRGCPEISDLGIIGFTENCRSLKKVSFGSC-GFGVKGMNALLNTCLGLEEL 220

  Fly   390 NVSWCHLISENGVEALARG---------CVK-----------------LRKFSSKGCK------- 421
            :|.....|.. |.|.:..|         |:|                 ||......|.       
plant   221 SVKRLRGIGA-GAELIGPGGAAGSLKVICLKELHNGQCFAPLLSGAKGLRILKIFRCSGDWDRVF 284

  Fly   422 ------------------QINDNAIMCLAKYCPDLMVLNLHSCETITDSSIRQLAANCHKLQKLC 468
                              |::|..:..|:| |..:.||:|......|:..:..:|..|..|:||.
plant   285 EAVRDKVNAIVEIHLERIQMSDLGLTALSK-CSGVEVLHLVKTPDCTNVGLALVAERCKLLRKLH 348

  Fly   469 VS--KCADLTDLTLLSLSQHNHLLNTLEVSGCRNFTDIGFQALGRNCKYLERMDLEECSQITDLT 531
            :.  |...:.|..|:.::::...|..|.:.|. |.|.:..:|:..||..|||:.|.....:.|..
plant   349 IDGWKTNRIGDEGLIVVAKYCWNLQELVLIGV-NPTKLSLEAIVSNCLNLERLALCGSDTVGDTE 412

  Fly   532 LAHLATGCPSLEKLTLSHCELITDDGIRHLTTGSCAAEILSVLELDNCPLITDRTLEHLVSCHNL 596
            |..:|..|.:|.||.:.:|. ||||||:.|..|                            |.||
plant   413 LCCIAEKCLALRKLCIKNCP-ITDDGIKALGNG----------------------------CPNL 448

  Fly   597 QRIELFDCQLITRTAIRKLKNHLPNIKVHAYFAPGTP 633
            .::::..|:.:|......|:.....:.|: ..||.||
plant   449 LKVKVKKCRGVTTQGADLLRKRRALLVVN-LDAPETP 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box_FBXL2-like 237..281 CDD:438887 16/43 (37%)
leucine-rich repeat 280..307 CDD:275381 6/26 (23%)
AMN1 <308..453 CDD:187754 38/197 (19%)
leucine-rich repeat 308..327 CDD:275381 4/20 (20%)
leucine-rich repeat 334..359 CDD:275381 6/24 (25%)
leucine-rich repeat 360..385 CDD:275381 5/24 (21%)
leucine-rich repeat 386..411 CDD:275381 8/33 (24%)
AMN1 <409..586 CDD:187754 50/220 (23%)
leucine-rich repeat 412..437 CDD:275381 8/49 (16%)
leucine-rich repeat 438..463 CDD:275381 6/24 (25%)
leucine-rich repeat 464..515 CDD:275381 14/52 (27%)
leucine-rich repeat 516..541 CDD:275381 8/24 (33%)
leucine-rich repeat 542..561 CDD:275381 10/18 (56%)
leucine-rich repeat 571..595 CDD:275381 1/23 (4%)
leucine-rich repeat 596..621 CDD:275381 4/24 (17%)
VFB3NP_567316.1 F-box_AtTIR1-like 74..112 CDD:438930 15/39 (38%)
leucine-rich repeat 89..114 CDD:275381 9/26 (35%)
leucine-rich repeat 115..165 CDD:275381 11/51 (22%)
AMN1 <146..>226 CDD:187754 19/80 (24%)
leucine-rich repeat 166..191 CDD:275381 6/24 (25%)
leucine-rich repeat 192..216 CDD:275381 5/24 (21%)
leucine-rich repeat 268..293 CDD:275381 3/24 (13%)
leucine-rich repeat 294..317 CDD:275381 5/23 (22%)
leucine-rich repeat 318..343 CDD:275381 6/24 (25%)
AMN1 <340..>463 CDD:187754 40/152 (26%)
leucine-rich repeat 344..371 CDD:275381 6/26 (23%)
leucine-rich repeat 372..396 CDD:275381 8/24 (33%)
leucine-rich repeat 397..422 CDD:275381 8/24 (33%)
leucine-rich repeat 423..447 CDD:275381 13/52 (25%)

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