DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9003 and AT4G03630

DIOPT Version :9

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_192272.1 Gene:AT4G03630 / 825663 AraportID:AT4G03630 Length:220 Species:Arabidopsis thaliana


Alignment Length:207 Identity:49/207 - (23%)
Similarity:75/207 - (36%) Gaps:65/207 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   373 DNSLKYLSDGCPNLMEINVSWCHLISENGVEALARGCVKLRKFSSKGCKQINDNAIMCLAKYCPD 437
            |..|.:::.....|..:....||.:      ||::|          ||.:||.....        
plant     9 DELLTFVAYRSSILKRLGRMMCHAV------ALSQG----------GCVEINIEHFG-------- 49

  Fly   438 LMVLNLHSCETITDSSIRQLAANCHKLQKLCVSKCADLTDLTLLSLSQHNHLLNTLEVSGC---- 498
                        |||.:..:|.....|:.|.::||..:|.:.|.:.:....||..||:|.|    
plant    50 ------------TDSLLTYIADRSSNLRHLGLAKCDQITGMGLFTEAMKLPLLEDLELSYCLIKG 102

  Fly   499 RNFTDIGF-----QALGRNCK---------------YLERMDLEECSQ-----ITDLTLAHLATG 538
            :|...|||     :.|..||:               ..:||....|.|     ::|:.|..:..|
plant   103 KNLEAIGFACLHLKTLKLNCQGFKFPGFTYDHDALGIAKRMPELRCLQLFGNRVSDVGLNAIFDG 167

  Fly   539 CPSLEKLTLSHC 550
            ||.||.|.|..|
plant   168 CPHLEHLDLRQC 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box-like 240..285 CDD:289689
leucine-rich repeat 280..307 CDD:275381
AMN1 <308..453 CDD:187754 14/79 (18%)
leucine-rich repeat 308..327 CDD:275381
leucine-rich repeat 334..359 CDD:275381
leucine-rich repeat 360..385 CDD:275381 2/11 (18%)
leucine-rich repeat 386..411 CDD:275381 6/24 (25%)
AMN1 <409..586 CDD:187754 41/171 (24%)
leucine-rich repeat 412..437 CDD:275381 4/24 (17%)
leucine-rich repeat 438..463 CDD:275381 4/24 (17%)
leucine-rich repeat 464..515 CDD:275381 19/74 (26%)
leucine-rich repeat 516..541 CDD:275381 8/29 (28%)
leucine-rich repeat 542..561 CDD:275381 5/9 (56%)
leucine-rich repeat 571..595 CDD:275381
leucine-rich repeat 596..621 CDD:275381
AT4G03630NP_192272.1 AMN1 <39..179 CDD:187754 40/159 (25%)
leucine-rich repeat 64..89 CDD:275381 6/24 (25%)
leucine-rich repeat 90..114 CDD:275381 9/23 (39%)
leucine-rich repeat 115..145 CDD:275381 5/29 (17%)
leucine-rich repeat 146..170 CDD:275381 6/23 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.