DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9003 and fbxo41

DIOPT Version :10

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:XP_696198.4 Gene:fbxo41 / 567804 ZFINID:ZDB-GENE-090313-350 Length:805 Species:Danio rerio


Alignment Length:687 Identity:131/687 - (19%)
Similarity:222/687 - (32%) Gaps:241/687 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ASSAETGVMEVGGTSGTGTGS-------SSSNNGGGSSSNSGGAGGSIEL---LCPPSGSSSISG 57
            |..||..:..:.....|..||       |.||....:||.||.:.|..::   ...||.::|:.|
Zfish   274 ADRAEKQLQIISNCGTTPNGSLGHCSLGSKSNGRQRNSSLSGVSRGMYQVSDRRSSPSTAASVRG 338

  Fly    58 SASFSSNSGASGSSSQTHSTAVSSATDRSNNNGNNHNPSLQLNGNGGSNTRQHSSGSNSRQHSSS 122
            .:....:.|....|...|  |:....|     ...::...:|...||:...:             
Zfish   339 KSVSQGSGGYDSDSVDLH--ALEDCPD-----AQYYHVQCRLGEGGGAGYER------------- 383

  Fly   123 SSNSNSSNISPPPSSSSSSRSNNNNNNHSSNIISGFCSTIWRSATFGSATPVINPLPAVSINPKI 187
                           :::|||.........|         |:...:.::                
Zfish   384 ---------------AAASRSWGLRKQAIQN---------WQRRPYRNS---------------- 408

  Fly   188 ME-SSSDSCSLSSSTTPDVGLADQQRNMAGSAQ------------DQSE-------DQSQTFLGA 232
            || ...|...:.|.||.......:|...|.|:|            .:||       .:.....|:
Zfish   409 MEGEEGDVSDVGSRTTESEAEMWEQDRRADSSQHAGHRGGYRLPTGRSEGGYKACRHEKSPSKGS 473

  Fly   233 TELDDELIKQLPKEVLLRVFSYLDVVSLCRCAQVCKYWNVLALDGSSWQKI-------------N 284
            ..:..|::|.  :..|..:|:|||..:|.|.|:||:.|..:|...:.|.::             .
Zfish   474 EVISPEVLKM--RAALFCIFTYLDTKTLLRAAEVCRDWRSVARHPAVWTRVLLENARICSKFLCT 536

  Fly   285 LFDFQRDIEGPVIENISQRCRG-------FLKSLSLRGCQSVGDQSVRTLANHCHNIEHLDLSDC 342
            |..:.......:::|:..|.||       :||  |.|||...|.:::  |.....|:..|.:|.|
Zfish   537 LSQWCTQTHSLILQNLKPRQRGKKETKEEYLK--STRGCLEEGLEAL--LKGTGSNLLILKVSHC 597

  Fly   343 KK-ITDISTQSISRYCSKLTAINLHSCSN-ITDNSLKYLSDGCPNLMEINVSWCHLISENGVEAL 405
            .. :||.|....|.||..|.|:...|.:: :....:..|..||.:::.:.|:..|          
Zfish   598 PNLLTDRSLWLASCYCRALQAVTYRSATDPVGQEVIWALGAGCRDIISLQVAPLH---------- 652

  Fly   406 ARGCVKLRKFSSKGCKQINDNAIMCLAKYCPDLMVLNLHSCETITDSSIRQLAANCHKLQKLCVS 470
              .|.:..:||:: |.|       .:.:..|.|..|.:.             .|.|         
Zfish   653 --PCQQPARFSNR-CLQ-------TIGRCWPHLRALGVG-------------GAGC--------- 685

  Fly   471 KCADLTDLTLLSLSQHNHLLNTLEVSGCRNFTDIGFQALGRNCKYLERMDLEECSQITDLTLAHL 535
                                      |.:     |..:|.|||..|:.::|:..|:|.....|.:
Zfish   686 --------------------------GIQ-----GLASLARNCMRLQVLELDHVSEINQEVAAEM 719

  Fly   536 ATGCPSLEKLTLSHCELITDDGIRHLTTGSCAAEILSVLELDNCPLITDRTLEHLVS-CHNLQRI 599
                          |.    :|::.          |.:|.|.:.| :|.:.|.|..| |.||:.|
Zfish   720 --------------CR----EGLKG----------LEMLVLTSTP-VTPKALLHFNSVCRNLKSI 755

  Fly   600 ELFDCQLITRTAIRKLKNHLPNIKVHAYFA-PGTPPA 635
                               :..|.:..||. |.:|.|
Zfish   756 -------------------VVQIGIEDYFEDPNSPEA 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box_FBXL2-like 237..281 CDD:438887 14/43 (33%)
leucine-rich repeat 280..307 CDD:275381 6/46 (13%)
AMN1 <308..453 CDD:187754 34/146 (23%)
leucine-rich repeat 308..327 CDD:275381 7/18 (39%)
leucine-rich repeat 334..359 CDD:275381 9/25 (36%)
leucine-rich repeat 360..385 CDD:275381 6/25 (24%)
leucine-rich repeat 386..411 CDD:275381 3/24 (13%)
AMN1 <409..586 CDD:187754 28/176 (16%)
leucine-rich repeat 412..437 CDD:275381 4/24 (17%)
leucine-rich repeat 438..463 CDD:275381 4/24 (17%)
leucine-rich repeat 464..515 CDD:275381 6/50 (12%)
leucine-rich repeat 516..541 CDD:275381 5/24 (21%)
leucine-rich repeat 542..561 CDD:275381 2/18 (11%)
leucine-rich repeat 571..595 CDD:275381 9/24 (38%)
leucine-rich repeat 596..621 CDD:275381 2/24 (8%)
fbxo41XP_696198.4 Smc <137..>282 CDD:440809 3/7 (43%)
F-box_FBXO41 477..523 CDD:438881 15/47 (32%)
leucine-rich repeat 589..615 CDD:275381 9/25 (36%)
leucine-rich repeat 616..642 CDD:275381 6/25 (24%)
leucine-rich repeat 643..674 CDD:275381 7/50 (14%)
leucine-rich repeat 675..699 CDD:275381 10/76 (13%)
leucine-rich repeat 700..726 CDD:275381 7/43 (16%)
leucine-rich repeat 727..751 CDD:275381 9/24 (38%)

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