DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9003 and skp2

DIOPT Version :10

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:XP_068072015.2 Gene:skp2 / 563708 ZFINID:ZDB-GENE-030219-158 Length:510 Species:Danio rerio


Alignment Length:345 Identity:91/345 - (26%)
Similarity:147/345 - (42%) Gaps:62/345 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   243 LPKEVLLRVFSYLDVVSLCRCAQVCKYWNVLALDGSSWQKINLF-DFQRDIE-GPVIENISQRCR 305
            ||.|:||.:||.|.:..|.|.::|||.|:.||.|.|.|..::|. ..|.|.| |.|:.      .
Zfish   191 LPDELLLGIFSRLSLQDLLRTSRVCKRWHRLAFDESLWHSVDLVGKAQLDAELGQVLS------A 249

  Fly   306 GFLKSLSLRGCQSVGDQSVRTLANHCHNIEHLDLSDCKKITDISTQSISRYCS------------ 358
            |.|:......|  :|..|.::..:  ..::|||.|:|...|.:....:|| |.            
Zfish   250 GVLRLRCPHTC--IGQPSFKSTPS--LRVQHLDFSNCTVETSVLEDVLSR-CKHLQNLSLEGLVL 309

  Fly   359 ------------KLTAINLHSCSNITDNSLKYLSDGCPNLMEINVSWCHLISENGVEALARGC-V 410
                        ::..:||..||..:..||..:...|..:.|:|||||. .|...::|:|... .
Zfish   310 SDNIIYSLAQNPEIIRLNLCGCSGFSPESLTEMLTACTRIEEMNVSWCD-FSNLHIQAIASNIPS 373

  Fly   411 KLRKFSSKGCKQ-INDNAIMCLAKYCPDLMVLNLHSCETITDSS---IRQLAANCHKLQKLCVSK 471
            .:.:.:..|.:| :....:..:.|.||::..|:|.....:|..|   ::||::    |:.|.:|:
Zfish   374 SVSQLNISGYRQNLTMEDVKAIVKRCPNITDLDLSDSVLVTTDSFPVLQQLSS----LRHLGLSR 434

  Fly   472 CADLTDLTLLSLSQHNHLLNTLEVSGCRNFTDIGFQALGRNCKYLERMDLEECSQITDLTLAHLA 536
            |..:...:|:...:..: |.||||.|.     |....|...||.|..:      ||.....:.:|
Zfish   435 CYQIHPASLIDFEKFLN-LQTLEVFGL-----IQDSYLPILCKSLPHI------QINTQPFSTVA 487

  Fly   537 TGCPSLEK---LTLSHCELI 553
            ....|..|   |...||.|:
Zfish   488 RPTSSSRKDRTLWGMHCRLV 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box_FBXL2-like 237..281 CDD:438887 18/37 (49%)
leucine-rich repeat 280..307 CDD:275381 7/28 (25%)
AMN1 <308..453 CDD:187754 37/170 (22%)
leucine-rich repeat 308..327 CDD:275381 4/18 (22%)
leucine-rich repeat 334..359 CDD:275381 9/48 (19%)
leucine-rich repeat 360..385 CDD:275381 7/24 (29%)
leucine-rich repeat 386..411 CDD:275381 9/25 (36%)
AMN1 <409..586 CDD:187754 36/153 (24%)
leucine-rich repeat 412..437 CDD:275381 4/25 (16%)
leucine-rich repeat 438..463 CDD:275381 6/27 (22%)
leucine-rich repeat 464..515 CDD:275381 14/50 (28%)
leucine-rich repeat 516..541 CDD:275381 4/24 (17%)
leucine-rich repeat 542..561 CDD:275381 5/15 (33%)
leucine-rich repeat 571..595 CDD:275381
leucine-rich repeat 596..621 CDD:275381
skp2XP_068072015.2 None
Blue background indicates that the domain is not in the aligned region.

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