DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9003 and fbxl15

DIOPT Version :9

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_001011123.1 Gene:fbxl15 / 496536 XenbaseID:XB-GENE-973058 Length:292 Species:Xenopus tropicalis


Alignment Length:297 Identity:70/297 - (23%)
Similarity:132/297 - (44%) Gaps:55/297 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   276 DGSSWQKINLFDFQ-RDIEGPVIENISQRCRGFLKSLSLRGCQSVGDQSVRTLANHCHNIEHLDL 339
            |.||   ::|.|.. .|:..|.|          |::|.||..     .|::.::....::.||.|
 Frog     6 DNSS---VHLLDLPWEDVLVPHI----------LRNLPLRHI-----LSLQRVSKPFQSLVHLYL 52

  Fly   340 SDCKKI--TDISTQ-------SISRYCSKLTAINLHSCSN-ITDNSLKYLSDGCPNLMEINVSWC 394
            ::|:..  |.:.:|       .:.|..:.|..::|.||.: :||..|..:.....:|:.||::  
 Frog    53 ANCRHFDSTQLGSQLPKSTFSELLRNNTVLQKLDLQSCCDWLTDKELLPVIGQNHHLIHINLN-- 115

  Fly   395 HLISENGVEALARGCVKLRKFSSKGCKQINDNAIMCLAKYCPDLMVLNLHSCETITDSSIRQLAA 459
                                    .|.|:...:::.::..||.|..:.|..||.:...|:|.|..
 Frog   116 ------------------------SCGQLTRQSLVAISLSCPHLQNICLGHCEWVDCLSLRSLVD 156

  Fly   460 NCHKLQKLCVSKCADLTDLTLLSLSQHNHLLNTLEVSGCRNFTDIGFQALGRNCKYLERMDLEEC 524
            :|..|:.:.::.|..|.|.|:..|.|.:..|.:|.::...|.:||..:...:||:.||.:||..|
 Frog   157 HCKCLEAIDLTACRQLKDDTISYLVQKSTRLKSLSLAVNANISDIAVEETAKNCRDLEHLDLTGC 221

  Fly   525 SQITDLTLAHLATGCPSLEKLTLSHCELITDDGIRHL 561
            .::.:.::..||..|..|:.|.:.||..:|:..:.:|
 Frog   222 LRVKNDSIRTLAEYCTKLKSLKVKHCHNVTESSLGNL 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box-like 240..285 CDD:289689 3/8 (38%)
leucine-rich repeat 280..307 CDD:275381 5/27 (19%)
AMN1 <308..453 CDD:187754 30/154 (19%)
leucine-rich repeat 308..327 CDD:275381 5/18 (28%)
leucine-rich repeat 334..359 CDD:275381 7/33 (21%)
leucine-rich repeat 360..385 CDD:275381 7/25 (28%)
leucine-rich repeat 386..411 CDD:275381 3/24 (13%)
AMN1 <409..586 CDD:187754 40/153 (26%)
leucine-rich repeat 412..437 CDD:275381 3/24 (13%)
leucine-rich repeat 438..463 CDD:275381 8/24 (33%)
leucine-rich repeat 464..515 CDD:275381 14/50 (28%)
leucine-rich repeat 516..541 CDD:275381 8/24 (33%)
leucine-rich repeat 542..561 CDD:275381 5/18 (28%)
leucine-rich repeat 571..595 CDD:275381
leucine-rich repeat 596..621 CDD:275381
fbxl15NP_001011123.1 leucine-rich repeat 47..81 CDD:275381 7/33 (21%)
AMN1 65..251 CDD:187754 50/211 (24%)
leucine-rich repeat 82..108 CDD:275381 7/25 (28%)
leucine-rich repeat 109..134 CDD:275381 6/50 (12%)
LRR 1 134..155 6/20 (30%)
leucine-rich repeat 135..160 CDD:275381 8/24 (33%)
LRR 2 160..181 5/20 (25%)
leucine-rich repeat 161..186 CDD:275381 7/24 (29%)
LRR 3 186..207 5/20 (25%)
leucine-rich repeat 187..212 CDD:275381 7/24 (29%)
LRR 4 212..233 5/20 (25%)
leucine-rich repeat 213..238 CDD:275381 8/24 (33%)
LRR 5 238..259 6/21 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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